| Definition | Chlamydophila pneumoniae J138, complete genome. |
|---|---|
| Accession | NC_002491 |
| Length | 1,226,565 |
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The map label for this gene is pmp_1
Identifier: 15835540
GI number: 15835540
Start: 4127
End: 6895
Strand: Direct
Name: pmp_1
Synonym: CPj0005
Alternate gene names: 15835540
Gene position: 4127-6895 (Clockwise)
Preceding gene: 15835539
Following gene: 15835542
Centisome position: 0.34
GC content: 41.06
Gene sequence:
>2769_bases ATGCGATTTTCGCTCTGCGGATTTCCTCTAGTTTTTTCTTTTACATTGCTCTCAGTCTTCGACACTTCTTTGAGTGCTAC TACGATTTCTTTAACCCCAGAAGATAGTTTTCATGGAGATAGTCAGAATGCAGAACGTTCTTATAATGTTCAAGCTGGGG ATGTCTATAGCCTTACTGGTGATGTCTCAATATCTAACGTCGATAACTCTGCATTAAATAAAGCCTGCTTCAATGTGACC TCAGGAAGTGTGACGTTCGCAGGAAATCATCATGGGTTATATTTTAATAATATTTCCTCAGGAACTACAAAGGAAGGGGC TGTACTTTGTTGCCAAGATCCTCAAGCAACGGCACGTTTTTCTGGGTTCTCCACGCTCTCTTTTATTCAGAGCCCCGGAG ATATTAAAGAACAGGGATGTCTCTATTCAAAAAATGCACTTATGCTCTTAAACAATTATGTAGTGCGTTTTGAACAAAAC CAAAGTAAGACTAAAGGCGGAGCTATTAGTGGGGCGAATGTTACTATAGTAGGCAACTACGATTCCGTCTCTTTCTATCA GAATGCAGCCACTTTTGGAGGTGCTATCCATTCTTCAGGTCCCCTACAGATTGCAGTAAATCAGGCAGAGATAAGATTTG CACAAAATACTGCCAAGAATGGTTCTGGAGGGGCTTTGTACTCCGATGGTGATATTGATATTGATCAGAATGCTTATGTT CTATTTCGAGAAAATGAGGCATTGACTACTGCTATAGGTAAGGGAGGGGCTGTCTGTTGTCTTCCCACTTCAGGAAGTAG TACTCCAGTTCCTATTGTGACTTTCTCTGACAATAAACAGTTAGTCTTTGAAAGAAACCATTCCATAATGGGTGGCGGAG CCATTTATGCTAGGAAACTTAGCATCTCTTCAGGAGGTCCTACTCTATTTATCAATAATATATCATATGCAAATTCGCAA AATTTAGGTGGAGCTATTGCCATTGATACTGGAGGGGAGATCAGTTTATCAGCAGAGAAAGGAACAATTACATTCCAAGG AAACCGGACGAGCTTACCGTTTTTGAATGGCATCCATCTTTTACAAAATGCTAAATTCCTGAAATTACAGGCGAGAAATG GATACTCTATAGAATTTTATGATCCTATTACTTCTGAAGCAGATGGGTCTACCCAATTGAATATCAACGGAGATCCTAAA AATAAAGAGTACACAGGGACCATACTCTTTTCTGGAGAAAAGAGTCTAGCAAACGATCCTAGGGATTTTAAATCTACAAT CCCTCAGAACGTCAACCTGTCTGCAGGATACTTAGTTATTAAAGAGGGGGCCGAAGTCACAGTTTCAAAATTCACGCAGT CTCCAGGATCGCATTTAGTTTTAGATTTAGGAACCAAACTGATAGCCTCTAAGGAAGACATTGCCATCACAGGCCTCGCG ATAGATATAGATAGCTTAAGCTCATCCTCAACAGCAGCTGTTATTAAAGCAAACACCGCAAATAAACAGATATCCGTGAC GGACTCTATAGAACTTATCTCGCCTACTGGCAATGCCTATGAAGATCTCAGAATGAGAAATTCACAGACGTTCCCTCTGC TCTCTTTAGAGCCTGGAGCCGGGGGTAGTGTGACTGTAACTGCTGGAGATTTCCTACCGGTAAGTCCCCATTATGGTTTT CAAGGCAATTGGAAATTAGCTTGGACAGGAACTGGAAACAAAGTTGGAGAATTCTTCTGGGATAAAATAAATTATAAGCC TAGACCTGAAAAAGAAGGAAATTTAGTTCCTAATATCTTGTGGGGGAATGCTGTAGATGTCAGATCCTTAATGCAGGTTC AAGAGACCCATGCATCGAGCTTACAGACAGATCGAGGGCTGTGGATCGATGGAATTGGGAATTTCTTCCATGTATCTGCC TCCGAAGACAATATAAGGTACCGTCATAACAGCGGTGGATATGTTCTATCTGTAAATAATGAGATCACACCTAAGCACTA TACTTCGATGGCATTTTCCCAACTCTTTAGTAGAGACAAGGACTATGCGGTTTCCAACAACGAATACAGAATGTATTTAG GATCGTATCTCTATCAATATACAACCTCCCTAGGGAATATTTTCCGTTATGCTTCGCGTAACCCTAATGTAAACGTCGGG ATTCTCTCAAGAAGGTTTCTTCAAAATCCTCTTATGATTTTTCATTTTTTGTGTGCTTATGGTCATGCCACCAATGATAT GAAAACAGACTACGCAAATTTCCCTATGGTGAAAAACAGCTGGAGAAACAATTGTTGGGCTATAGAGTGCGGAGGGAGCA TGCCTCTATTGGTATTTGAGAACGGAAGACTTTTCCAAGGTGCCATCCCATTTATGAAACTACAATTAGTTTATGCTTAT CAGGGAGATTTCAAAGAGACGACTGCAGATGGCCGTAGATTTAGTAATGGGAGTTTAACATCGATTTCTGTACCTCTAGG CATACGCTTTGAGAAGCTGGCACTTTCTCAGGATGTACTCTATGACTTTAGTTTCTCCTATATTCCTGATATTTTCCGTA AGGATCCCTCATGTGAAGCTGCTCTGGTGATTAGCGGAGACTCTTGGCTTGTTCCGGCAGCACACGTATCAAGACATGCT TTTGTAGGGAGTGGAACGGGTCGGTATCACTTTAACGACTATACTGAGCTCTTATGTCGAGGAAGTATAGAATGCCGCCC CCATGCTAGGAATTATAATATAAACTGTGGAAGCAAATTTCGTTTTTAG
Upstream 100 bases:
>100_bases AATTCTTTTTAAGTGACAAGAAATTCTTGTGCTCGGCTTGCTTTCTTATTCTTATTGACGTATTGCTTGATCAGATATTC ATTTTGATTTAGGTACTAAA
Downstream 100 bases:
>100_bases AAGGTTTCCATTGCCTGTGTGGTTCCGGATCTTAACTATAAATCCTGGACTATGGATCATAGGCATTGGGTTTCTCGAAC TTGTGTGGAGAATAACGACA
Product: hypothetical protein
Products: NA
Alternate protein names: Outer membrane protein 6; Polymorphic membrane protein 1
Number of amino acids: Translated: 922; Mature: 922
Protein sequence:
>922_residues MRFSLCGFPLVFSFTLLSVFDTSLSATTISLTPEDSFHGDSQNAERSYNVQAGDVYSLTGDVSISNVDNSALNKACFNVT SGSVTFAGNHHGLYFNNISSGTTKEGAVLCCQDPQATARFSGFSTLSFIQSPGDIKEQGCLYSKNALMLLNNYVVRFEQN QSKTKGGAISGANVTIVGNYDSVSFYQNAATFGGAIHSSGPLQIAVNQAEIRFAQNTAKNGSGGALYSDGDIDIDQNAYV LFRENEALTTAIGKGGAVCCLPTSGSSTPVPIVTFSDNKQLVFERNHSIMGGGAIYARKLSISSGGPTLFINNISYANSQ NLGGAIAIDTGGEISLSAEKGTITFQGNRTSLPFLNGIHLLQNAKFLKLQARNGYSIEFYDPITSEADGSTQLNINGDPK NKEYTGTILFSGEKSLANDPRDFKSTIPQNVNLSAGYLVIKEGAEVTVSKFTQSPGSHLVLDLGTKLIASKEDIAITGLA IDIDSLSSSSTAAVIKANTANKQISVTDSIELISPTGNAYEDLRMRNSQTFPLLSLEPGAGGSVTVTAGDFLPVSPHYGF QGNWKLAWTGTGNKVGEFFWDKINYKPRPEKEGNLVPNILWGNAVDVRSLMQVQETHASSLQTDRGLWIDGIGNFFHVSA SEDNIRYRHNSGGYVLSVNNEITPKHYTSMAFSQLFSRDKDYAVSNNEYRMYLGSYLYQYTTSLGNIFRYASRNPNVNVG ILSRRFLQNPLMIFHFLCAYGHATNDMKTDYANFPMVKNSWRNNCWAIECGGSMPLLVFENGRLFQGAIPFMKLQLVYAY QGDFKETTADGRRFSNGSLTSISVPLGIRFEKLALSQDVLYDFSFSYIPDIFRKDPSCEAALVISGDSWLVPAAHVSRHA FVGSGTGRYHFNDYTELLCRGSIECRPHARNYNINCGSKFRF
Sequences:
>Translated_922_residues MRFSLCGFPLVFSFTLLSVFDTSLSATTISLTPEDSFHGDSQNAERSYNVQAGDVYSLTGDVSISNVDNSALNKACFNVT SGSVTFAGNHHGLYFNNISSGTTKEGAVLCCQDPQATARFSGFSTLSFIQSPGDIKEQGCLYSKNALMLLNNYVVRFEQN QSKTKGGAISGANVTIVGNYDSVSFYQNAATFGGAIHSSGPLQIAVNQAEIRFAQNTAKNGSGGALYSDGDIDIDQNAYV LFRENEALTTAIGKGGAVCCLPTSGSSTPVPIVTFSDNKQLVFERNHSIMGGGAIYARKLSISSGGPTLFINNISYANSQ NLGGAIAIDTGGEISLSAEKGTITFQGNRTSLPFLNGIHLLQNAKFLKLQARNGYSIEFYDPITSEADGSTQLNINGDPK NKEYTGTILFSGEKSLANDPRDFKSTIPQNVNLSAGYLVIKEGAEVTVSKFTQSPGSHLVLDLGTKLIASKEDIAITGLA IDIDSLSSSSTAAVIKANTANKQISVTDSIELISPTGNAYEDLRMRNSQTFPLLSLEPGAGGSVTVTAGDFLPVSPHYGF QGNWKLAWTGTGNKVGEFFWDKINYKPRPEKEGNLVPNILWGNAVDVRSLMQVQETHASSLQTDRGLWIDGIGNFFHVSA SEDNIRYRHNSGGYVLSVNNEITPKHYTSMAFSQLFSRDKDYAVSNNEYRMYLGSYLYQYTTSLGNIFRYASRNPNVNVG ILSRRFLQNPLMIFHFLCAYGHATNDMKTDYANFPMVKNSWRNNCWAIECGGSMPLLVFENGRLFQGAIPFMKLQLVYAY QGDFKETTADGRRFSNGSLTSISVPLGIRFEKLALSQDVLYDFSFSYIPDIFRKDPSCEAALVISGDSWLVPAAHVSRHA FVGSGTGRYHFNDYTELLCRGSIECRPHARNYNINCGSKFRF >Mature_922_residues MRFSLCGFPLVFSFTLLSVFDTSLSATTISLTPEDSFHGDSQNAERSYNVQAGDVYSLTGDVSISNVDNSALNKACFNVT SGSVTFAGNHHGLYFNNISSGTTKEGAVLCCQDPQATARFSGFSTLSFIQSPGDIKEQGCLYSKNALMLLNNYVVRFEQN QSKTKGGAISGANVTIVGNYDSVSFYQNAATFGGAIHSSGPLQIAVNQAEIRFAQNTAKNGSGGALYSDGDIDIDQNAYV LFRENEALTTAIGKGGAVCCLPTSGSSTPVPIVTFSDNKQLVFERNHSIMGGGAIYARKLSISSGGPTLFINNISYANSQ NLGGAIAIDTGGEISLSAEKGTITFQGNRTSLPFLNGIHLLQNAKFLKLQARNGYSIEFYDPITSEADGSTQLNINGDPK NKEYTGTILFSGEKSLANDPRDFKSTIPQNVNLSAGYLVIKEGAEVTVSKFTQSPGSHLVLDLGTKLIASKEDIAITGLA IDIDSLSSSSTAAVIKANTANKQISVTDSIELISPTGNAYEDLRMRNSQTFPLLSLEPGAGGSVTVTAGDFLPVSPHYGF QGNWKLAWTGTGNKVGEFFWDKINYKPRPEKEGNLVPNILWGNAVDVRSLMQVQETHASSLQTDRGLWIDGIGNFFHVSA SEDNIRYRHNSGGYVLSVNNEITPKHYTSMAFSQLFSRDKDYAVSNNEYRMYLGSYLYQYTTSLGNIFRYASRNPNVNVG ILSRRFLQNPLMIFHFLCAYGHATNDMKTDYANFPMVKNSWRNNCWAIECGGSMPLLVFENGRLFQGAIPFMKLQLVYAY QGDFKETTADGRRFSNGSLTSISVPLGIRFEKLALSQDVLYDFSFSYIPDIFRKDPSCEAALVISGDSWLVPAAHVSRHA FVGSGTGRYHFNDYTELLCRGSIECRPHARNYNINCGSKFRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PMP1_CHLPN (Q9Z9G5)
Other databases:
- EMBL: AJ133035 - EMBL: AE001363 - EMBL: AE002161 - EMBL: BA000008 - EMBL: AE009440 - PIR: B72131 - PIR: E86491 - PIR: F81539 - RefSeq: NP_224218.1 - RefSeq: NP_300064.1 - RefSeq: NP_445309.1 - RefSeq: NP_876282.1 - ProteinModelPortal: Q9Z9G5 - GeneID: 1466689 - GeneID: 894759 - GeneID: 918793 - GeneID: 963140 - GenomeReviews: AE001363_GR - GenomeReviews: AE002161_GR - GenomeReviews: AE009440_GR - GenomeReviews: BA000008_GR - KEGG: cpa:CP0770 - KEGG: cpn:CPn0005 - KEGG: cpt:CpB0006 - TIGR: CP_0770 - HOGENOM: HBG415279 - OMA: QETHASS - ProtClustDB: CLSK337230 - BioCyc: CPNE115711:CP_0770-MONOMER - BioCyc: CPNE115713:CPN0005-MONOMER - BioCyc: CPNE138677:CPJ0005-MONOMER - BioCyc: CPNE182082:CPB0006-MONOMER - InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR011427 - SMART: SM00869 - TIGRFAMs: TIGR01376
Pfam domain/function: PF03797 Autotransporter; PF07548 ChlamPMP_M; SSF103515 Auto_transptbeta
EC number: NA
Molecular weight: Translated: 100458; Mature: 100458
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS51208 AUTOTRANSPORTER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFSLCGFPLVFSFTLLSVFDTSLSATTISLTPEDSFHGDSQNAERSYNVQAGDVYSLTG CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECEECCCEEEEEC DVSISNVDNSALNKACFNVTSGSVTFAGNHHGLYFNNISSGTTKEGAVLCCQDPQATARF CEEEECCCCHHHHHHHEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCCEEE SGFSTLSFIQSPGDIKEQGCLYSKNALMLLNNYVVRFEQNQSKTKGGAISGANVTIVGNY CCCEEEHHHCCCCCHHHCCEEECCCEEEEEEEEEEEEECCCCCCCCCEECCCEEEEEECC DSVSFYQNAATFGGAIHSSGPLQIAVNQAEIRFAQNTAKNGSGGALYSDGDIDIDQNAYV CCEEHHHCHHHHCCEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEECCCEEECCCEEE LFRENEALTTAIGKGGAVCCLPTSGSSTPVPIVTFSDNKQLVFERNHSIMGGGAIYARKL EEECCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEECCCEEEEEEE SISSGGPTLFINNISYANSQNLGGAIAIDTGGEISLSAEKGTITFQGNRTSLPFLNGIHL EECCCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCEEEECCCCCCCCHHHCHHH LQNAKFLKLQARNGYSIEFYDPITSEADGSTQLNINGDPKNKEYTGTILFSGEKSLANDP HCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCHHHCCCC RDFKSTIPQNVNLSAGYLVIKEGAEVTVSKFTQSPGSHLVLDLGTKLIASKEDIAITGLA HHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCHHHCCCCCEEEEEEE IDIDSLSSSSTAAVIKANTANKQISVTDSIELISPTGNAYEDLRMRNSQTFPLLSLEPGA EEECCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCHHHHHHCCCCCCEEEEECCCC GGSVTVTAGDFLPVSPHYGFQGNWKLAWTGTGNKVGEFFWDKINYKPRPEKEGNLVPNIL CCEEEEEECCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEEE WGNAVDVRSLMQVQETHASSLQTDRGLWIDGIGNFFHVSASEDNIRYRHNSGGYVLSVNN CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCEEEEECC EITPKHYTSMAFSQLFSRDKDYAVSNNEYRMYLGSYLYQYTTSLGNIFRYASRNPNVNVG CCCCHHHHHHHHHHHHCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE ILSRRFLQNPLMIFHFLCAYGHATNDMKTDYANFPMVKNSWRNNCWAIECGGSMPLLVFE HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE NGRLFQGAIPFMKLQLVYAYQGDFKETTADGRRFSNGSLTSISVPLGIRFEKLALSQDVL CCCEEECCCCEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCEEEHHHCCCHHH YDFSFSYIPDIFRKDPSCEAALVISGDSWLVPAAHVSRHAFVGSGTGRYHFNDYTELLCR EECCHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHCCCEEEEECCCCEEECCHHHHHHHC GSIECRPHARNYNINCGSKFRF CCCEECCCCCCEECCCCCCCCC >Mature Secondary Structure MRFSLCGFPLVFSFTLLSVFDTSLSATTISLTPEDSFHGDSQNAERSYNVQAGDVYSLTG CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECEECCCEEEEEC DVSISNVDNSALNKACFNVTSGSVTFAGNHHGLYFNNISSGTTKEGAVLCCQDPQATARF CEEEECCCCHHHHHHHEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCCEEE SGFSTLSFIQSPGDIKEQGCLYSKNALMLLNNYVVRFEQNQSKTKGGAISGANVTIVGNY CCCEEEHHHCCCCCHHHCCEEECCCEEEEEEEEEEEEECCCCCCCCCEECCCEEEEEECC DSVSFYQNAATFGGAIHSSGPLQIAVNQAEIRFAQNTAKNGSGGALYSDGDIDIDQNAYV CCEEHHHCHHHHCCEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEECCCEEECCCEEE LFRENEALTTAIGKGGAVCCLPTSGSSTPVPIVTFSDNKQLVFERNHSIMGGGAIYARKL EEECCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEECCCEEEEEEE SISSGGPTLFINNISYANSQNLGGAIAIDTGGEISLSAEKGTITFQGNRTSLPFLNGIHL EECCCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCEEEECCCCCCCCHHHCHHH LQNAKFLKLQARNGYSIEFYDPITSEADGSTQLNINGDPKNKEYTGTILFSGEKSLANDP HCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCHHHCCCC RDFKSTIPQNVNLSAGYLVIKEGAEVTVSKFTQSPGSHLVLDLGTKLIASKEDIAITGLA HHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCHHHCCCCCEEEEEEE IDIDSLSSSSTAAVIKANTANKQISVTDSIELISPTGNAYEDLRMRNSQTFPLLSLEPGA EEECCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCHHHHHHCCCCCCEEEEECCCC GGSVTVTAGDFLPVSPHYGFQGNWKLAWTGTGNKVGEFFWDKINYKPRPEKEGNLVPNIL CCEEEEEECCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEEE WGNAVDVRSLMQVQETHASSLQTDRGLWIDGIGNFFHVSASEDNIRYRHNSGGYVLSVNN CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCEEEEECC EITPKHYTSMAFSQLFSRDKDYAVSNNEYRMYLGSYLYQYTTSLGNIFRYASRNPNVNVG CCCCHHHHHHHHHHHHCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE ILSRRFLQNPLMIFHFLCAYGHATNDMKTDYANFPMVKNSWRNNCWAIECGGSMPLLVFE HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE NGRLFQGAIPFMKLQLVYAYQGDFKETTADGRRFSNGSLTSISVPLGIRFEKLALSQDVL CCCEEECCCCEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCEEEHHHCCCHHH YDFSFSYIPDIFRKDPSCEAALVISGDSWLVPAAHVSRHAFVGSGTGRYHFNDYTELLCR EECCHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHCCCEEEEECCCCEEECCHHHHHHHC GSIECRPHARNYNINCGSKFRF CCCEECCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10539856; 10192388; 10684935; 10871362