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The map label for this gene is ybeY [C]

Identifier: 15594406

GI number: 15594406

Start: 56281

End: 56748

Strand: Reverse

Name: ybeY [C]

Synonym: BB0060

Alternate gene names: 15594406

Gene position: 56748-56281 (Counterclockwise)

Preceding gene: 15594407

Following gene: 15594405

Centisome position: 6.23

GC content: 25.85

Gene sequence:

>468_bases
TTGTCCAAATCTGATTTGAATTTATTGGTAGAAAATATTAAATTTGAACATCTTAATGTTTTTTATGATTTTGTTGTATC
TGTTTTGAATGCTCTTTCCATTAGCGATTTTGAACTTTCAGTTATTCTTTGTGATAATGCTTATATACAAGAATTGAATA
ATAAATTTAGAAACAAGAACGAGCCAACTGATGTTCTTTCTTTTAATTATAATGAACATAATGAGCTTAACGAAGATTTG
GTTGATGGCATAAATTATAAAATACAAGGAGATCTTGTAATATCTTTTGAATATTTAAAATTCAGCGCTCAAGAGTTTAA
TGTTGAAATTTATGAAGAACTTCAACGTGTTACTATTCATGGGATTTTGCATTTAATGGGATATAAACATGAAACTAATG
ATTTTCAAAAGGAAGGTATGTTGATTCTTCAAGAAAATATCTTAAAAGAAAATAAAAGGGTATTTTAG

Upstream 100 bases:

>100_bases
ATTTTTTTGGTTTTTAGTTTGCAAAATAAAATAATTTAATTGCTATAGCAATTAATCATACTTGTAAGTTATATGTGGAT
TATTTTAGGGTATATTTAAT

Downstream 100 bases:

>100_bases
ATGTTGGGATTTTTTAATTTTAAAAACAAAAAGAAGAAAAAAGGAAGCCCAGAAAATGATCTTGAAGATAAGTCGAATAT
TGAAACTTCTTTGATAAAAA

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSKSDLNLLVENIKFEHLNVFYDFVVSVLNALSISDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDL
VDGINYKIQGDLVISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKENKRVF

Sequences:

>Translated_155_residues
MSKSDLNLLVENIKFEHLNVFYDFVVSVLNALSISDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDL
VDGINYKIQGDLVISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKENKRVF
>Mature_154_residues
SKSDLNLLVENIKFEHLNVFYDFVVSVLNALSISDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDLV
DGINYKIQGDLVISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKENKRVF

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=120, Percent_Identity=35.8333333333333, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BORBU (O51087)

Other databases:

- EMBL:   AE000783
- PIR:   D70107
- RefSeq:   NP_212194.1
- ProteinModelPortal:   O51087
- SMR:   O51087
- EnsemblBacteria:   EBBORT00000008529
- GeneID:   1194896
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0060
- NMPDR:   fig|224326.1.peg.444
- TIGR:   BB_0060
- GeneTree:   EBGT00050000007333
- HOGENOM:   HBG352936
- OMA:   ELQRNTI
- ProtClustDB:   PRK00016
- BioCyc:   BBUR224326:BB_0060-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18259; Mature: 18128

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSDLNLLVENIKFEHLNVFYDFVVSVLNALSISDFELSVILCDNAYIQELNNKFRNKN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCC
EPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVEIYEELQRVTIH
CCCCEEEECCCCCCCCCHHHHCCCCEEEECCEEEEEHHHEECHHHCCHHHHHHHHHHHHH
GILHLMGYKHETNDFQKEGMLILQENILKENKRVF
HHHHHHCCCCCCCCHHHCCEEEEHHHHHHCCCCCC
>Mature Secondary Structure 
SKSDLNLLVENIKFEHLNVFYDFVVSVLNALSISDFELSVILCDNAYIQELNNKFRNKN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCC
EPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVEIYEELQRVTIH
CCCCEEEECCCCCCCCCHHHHCCCCEEEECCEEEEEHHHEECHHHCCHHHHHHHHHHHHH
GILHLMGYKHETNDFQKEGMLILQENILKENKRVF
HHHHHHCCCCCCCCHHHCCEEEEHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685