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The map label for this gene is ypdA

Identifier: 255767493

GI number: 255767493

Start: 2400984

End: 2401958

Strand: Reverse

Name: ypdA

Synonym: BSU22950

Alternate gene names: 255767493

Gene position: 2401958-2400984 (Counterclockwise)

Preceding gene: 255767494

Following gene: 16079351

Centisome position: 56.98

GC content: 41.64

Gene sequence:

>975_bases
ATGATTCAAGAAAAAGCAATTATTATAGGCGGAGGACCTTGTGGACTATCTGCTGCCATTCACCTAAAACAAATTGGCAT
TGATGCCCTCGTCATCGAAAAAGGCAATGTCGTTAACAGTATTTACAATTACCCGACGCATCAAACCTTTTTCAGTTCAA
GTGAAAAGCTCGAAATCGGAGATGTGGCATTTATTACAGAGAACAGGAAGCCTGTCAGAATTCAGGCTTTATCGTATTAC
CGGGAAGTCGTTAAACGGAAAAACATCCGTGTTAATGCGTTTGAAATGGTGCGTAAAGTGACGAAAACGCAAAATAACAC
ATTCGTTATTGAGACGTCAAAAGAGACCTACACGACGCCATATTGTATCATCGCCACAGGCTATTATGATCATCCAAACT
ATATGGGCGTACCCGGTGAGGATTTGCCGAAAGTATTTCATTATTTTAAAGAAGGCCACCCGTATTTTGATAAAGATGTT
GTTGTCATCGGCGGGAAAAATTCAAGCGTGGACGCCGCCCTTGAACTCGTGAAATCTGGGGCGCGTGTCACAGTTTTATA
TAGGGGCAATGAGTATTCTCCGAGCATTAAGCCGTGGATTCTGCCGGAATTTGAAGCTCTCGTCAGAAACGGTACAATCC
GTATGGAATTTGGAGCTTGTGTCGAAAAAATCACCGAGAATGAAGTTGTGTTTCGCTCCGGAGAGAAAGAACTCATTACC
ATTAAAAATGATTTTGTATTTGCCATGACAGGCTATCATCCCGATCATCAATTTCTTGAAAAAATTGGTGTTGAAATTGA
TAAAGAAACAGGGCGTCCATTTTTCAACGAAGAAACGATGGAAACGAACGTTGAAGGTGTCTTTATTGCCGGTGTTATTG
CTGCGGGAAACAATGCAAATGAAATATTTATTGAAAACGGCAGGTTTCACGGGGGGCATATCGCAGCGGAAATCGCCAAA
AGAGAAAACCATTAA

Upstream 100 bases:

>100_bases
TTTGCATAAAAATAAAAAATCTCCTATGATAAAATAGGAGATTTTTTTATTCGGAAATAGAAAATATGAAGTGAAATGCC
AATCGCAGGAGTTGACAGAA

Downstream 100 bases:

>100_bases
AGATGAGGAGCATATGATGCATTCGTATGCTCTTTTTGTTTTTTTAAGTGCAGACAGATGTAAAATTTTAAACAACATGG
TAGGATAGATGTAGGAATAT

Product: FAD-dependent disulfide oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MIQEKAIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVVNSIYNYPTHQTFFSSSEKLEIGDVAFITENRKPVRIQALSYY
REVVKRKNIRVNAFEMVRKVTKTQNNTFVIETSKETYTTPYCIIATGYYDHPNYMGVPGEDLPKVFHYFKEGHPYFDKDV
VVIGGKNSSVDAALELVKSGARVTVLYRGNEYSPSIKPWILPEFEALVRNGTIRMEFGACVEKITENEVVFRSGEKELIT
IKNDFVFAMTGYHPDHQFLEKIGVEIDKETGRPFFNEETMETNVEGVFIAGVIAAGNNANEIFIENGRFHGGHIAAEIAK
RENH

Sequences:

>Translated_324_residues
MIQEKAIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVVNSIYNYPTHQTFFSSSEKLEIGDVAFITENRKPVRIQALSYY
REVVKRKNIRVNAFEMVRKVTKTQNNTFVIETSKETYTTPYCIIATGYYDHPNYMGVPGEDLPKVFHYFKEGHPYFDKDV
VVIGGKNSSVDAALELVKSGARVTVLYRGNEYSPSIKPWILPEFEALVRNGTIRMEFGACVEKITENEVVFRSGEKELIT
IKNDFVFAMTGYHPDHQFLEKIGVEIDKETGRPFFNEETMETNVEGVFIAGVIAAGNNANEIFIENGRFHGGHIAAEIAK
RENH
>Mature_324_residues
MIQEKAIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVVNSIYNYPTHQTFFSSSEKLEIGDVAFITENRKPVRIQALSYY
REVVKRKNIRVNAFEMVRKVTKTQNNTFVIETSKETYTTPYCIIATGYYDHPNYMGVPGEDLPKVFHYFKEGHPYFDKDV
VVIGGKNSSVDAALELVKSGARVTVLYRGNEYSPSIKPWILPEFEALVRNGTIRMEFGACVEKITENEVVFRSGEKELIT
IKNDFVFAMTGYHPDHQFLEKIGVEIDKETGRPFFNEETMETNVEGVFIAGVIAAGNNANEIFIENGRFHGGHIAAEIAK
RENH

Specific function: Unknown

COG id: COG0492

COG function: function code O; Thioredoxin reductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPDA_BACSU (P50736)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- PIR:   A69934
- RefSeq:   NP_390176.2
- ProteinModelPortal:   P50736
- SMR:   P50736
- EnsemblBacteria:   EBBACT00000001114
- GeneID:   938977
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22950
- NMPDR:   fig|224308.1.peg.2299
- GenoList:   BSU22950
- GeneTree:   EBGT00050000000433
- HOGENOM:   HBG403644
- ProtClustDB:   CLSK873081
- BioCyc:   BSUB:BSU22950-MONOMER
- InterPro:   IPR013027
- InterPro:   IPR001327
- InterPro:   IPR000103
- PRINTS:   PR00368
- PRINTS:   PR00469

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2

EC number: NA

Molecular weight: Translated: 36410; Mature: 36410

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQEKAIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVVNSIYNYPTHQTFFSSSEKLEIG
CCCCCEEEEECCCCCCHHEEEEEECCCEEEEEECCCHHHHHHCCCCCHHHCCCCCCEEEC
DVAFITENRKPVRIQALSYYREVVKRKNIRVNAFEMVRKVTKTQNNTFVIETSKETYTTP
EEEEEECCCCCEEEHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCCEEEEEECCCCCCCC
YCIIATGYYDHPNYMGVPGEDLPKVFHYFKEGHPYFDKDVVVIGGKNSSVDAALELVKSG
EEEEEECEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCC
ARVTVLYRGNEYSPSIKPWILPEFEALVRNGTIRMEFGACVEKITENEVVFRSGEKELIT
CEEEEEEECCCCCCCCCCCCCCCHHHHHHCCEEEEEHHHHHHHHCCCCEEEECCCCEEEE
IKNDFVFAMTGYHPDHQFLEKIGVEIDKETGRPFFNEETMETNVEGVFIAGVIAAGNNAN
EECCEEEEEECCCCCHHHHHHHCCEEECCCCCCCCCCCHHHCCCCEEEEEEEEEECCCCC
EIFIENGRFHGGHIAAEIAKRENH
EEEEECCEECCCHHHEEHHHHCCC
>Mature Secondary Structure
MIQEKAIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVVNSIYNYPTHQTFFSSSEKLEIG
CCCCCEEEEECCCCCCHHEEEEEECCCEEEEEECCCHHHHHHCCCCCHHHCCCCCCEEEC
DVAFITENRKPVRIQALSYYREVVKRKNIRVNAFEMVRKVTKTQNNTFVIETSKETYTTP
EEEEEECCCCCEEEHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCCEEEEEECCCCCCCC
YCIIATGYYDHPNYMGVPGEDLPKVFHYFKEGHPYFDKDVVVIGGKNSSVDAALELVKSG
EEEEEECEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCC
ARVTVLYRGNEYSPSIKPWILPEFEALVRNGTIRMEFGACVEKITENEVVFRSGEKELIT
CEEEEEEECCCCCCCCCCCCCCCHHHHHHCCEEEEEHHHHHHHHCCCCEEEECCCCEEEE
IKNDFVFAMTGYHPDHQFLEKIGVEIDKETGRPFFNEETMETNVEGVFIAGVIAAGNNAN
EECCEEEEEECCCCCHHHHHHHCCEEECCCCCCCCCCCHHHCCCCEEEEEEEEEECCCCC
EIFIENGRFHGGHIAAEIAKRENH
EEEEECCEECCCHHHEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377