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The map label for this gene is yybF

Identifier: 16081118

GI number: 16081118

Start: 4179163

End: 4180377

Strand: Reverse

Name: yybF

Synonym: BSU40660

Alternate gene names: 16081118

Gene position: 4180377-4179163 (Counterclockwise)

Preceding gene: 16081122

Following gene: 16081116

Centisome position: 99.16

GC content: 45.84

Gene sequence:

>1215_bases
ATGACATACATTCGAAAAGGCACACCGGTTTTTCGAAAAATTACGTTTGCTTTCTTCGCTGCGGGTTTCAATACATTTGC
GATTCTATATTGCGTACAGCCGCTCATGGAGGAATTCACGCGGGAATTTCATGTAACGCCTACTGCGGCGAGTCTTTCTT
TATCTGTTACCACAATGCTGTTAGCTGTGAGCATGCTTGTCTTTGGTTCATTATCCGAGGTGTGGGGACGCAAGCCTATT
ATGGGTATTTCCATGCTGGCCGCATCGGTTCTCTGTCTGGCATCGGCCTTTAGTCCGAGCTTTCATACACTGCTCGTATT
GAGAACCATTCAAGGCGTTGCGCTCGCAGGCCTTCCGTCGATTGCGATGGCTTATCTTGGGGAAGAAATTGAACCCGGAA
GTCTTGGATCAGCGATGGGGCTATATATCAGCGGAAATGCAATCGGCGCCGTTTTCGGAAGGATCGTTTCCGGGCTCCTG
AGCGAGTACTTGAATTGGCATATGGCGATGGGGACAATTGGTGTCATTAGTTTGATTGCTAGTGTTATATTTTTTATAAA
TTTGCCGCCATCCAGGCATTTTACGCCAAGAAAATTGAAGCTCGGGAAATTGGGAATGTCTCTGATCGGCCACTTGAGGG
ACCGTAAACTATTCAGCTTGTTTCTCATTGGTTTTTTGCTGCTTGGAAGCAATGTTGCCTTGTTTAATTACATTGTGTAT
GTGCTGTTGGGCCCGCCGTATTCGCTTAATAAAGCATTTTCCAGCTGGATCTTTATTGTGATGATTGTAGGCATTTTCAG
CTCGTCTTTCATTGGAAGAATGGTTGATCGGTATGGCTATCCGAAAATATTGGTGATGAATATTTTCATCGTCATTGCAG
GTGCGTTATTTACGATAAACAATATGCTGGCAGTGAAAATTCTGGGGATTGCCCTCTTTACATTCGGTTTTTTCGGAGGG
CATTCAGTTGCCAGCAGCTGGGTGGGCAGGAGAGCCCTTCACAACAAAGCACAGGCTTCATCGCTGTATTTGTTCTTTTA
TTACGCCGGTTCAAGTGTTTTCGGAACAATCGGAGGGCTATTCTGGTCTGGTTTTCACTGGCTGGGCGTCGTCGGTATGA
TCACCTTCATGCTGCTGGTTGCGTTATGGCTGTCGGGATACTTGGCAAGAAGTGTGAAAATGCCGGATAAGAGGAACGAA
AAAGGATTGAATTGA

Upstream 100 bases:

>100_bases
TATAAACAGACTCGAGGATGTTTGAATTCGTAAGAAATAAAGGATGATTGTTTATGAATGGCAGTGCTCCACAACATGAT
GAGGGACCGATAAAGTCCCG

Downstream 100 bases:

>100_bases
TCAGTAAAAAAGGACCGTTAGCGGGTCCTTTTTTATTTCCAATGGGCAGGGGTTCGTACAGACAGCGGCAGCTTTGTATT
CGAATCGCCGTTGGCGGCGT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTYIRKGTPVFRKITFAFFAAGFNTFAILYCVQPLMEEFTREFHVTPTAASLSLSVTTMLLAVSMLVFGSLSEVWGRKPI
MGISMLAASVLCLASAFSPSFHTLLVLRTIQGVALAGLPSIAMAYLGEEIEPGSLGSAMGLYISGNAIGAVFGRIVSGLL
SEYLNWHMAMGTIGVISLIASVIFFINLPPSRHFTPRKLKLGKLGMSLIGHLRDRKLFSLFLIGFLLLGSNVALFNYIVY
VLLGPPYSLNKAFSSWIFIVMIVGIFSSSFIGRMVDRYGYPKILVMNIFIVIAGALFTINNMLAVKILGIALFTFGFFGG
HSVASSWVGRRALHNKAQASSLYLFFYYAGSSVFGTIGGLFWSGFHWLGVVGMITFMLLVALWLSGYLARSVKMPDKRNE
KGLN

Sequences:

>Translated_404_residues
MTYIRKGTPVFRKITFAFFAAGFNTFAILYCVQPLMEEFTREFHVTPTAASLSLSVTTMLLAVSMLVFGSLSEVWGRKPI
MGISMLAASVLCLASAFSPSFHTLLVLRTIQGVALAGLPSIAMAYLGEEIEPGSLGSAMGLYISGNAIGAVFGRIVSGLL
SEYLNWHMAMGTIGVISLIASVIFFINLPPSRHFTPRKLKLGKLGMSLIGHLRDRKLFSLFLIGFLLLGSNVALFNYIVY
VLLGPPYSLNKAFSSWIFIVMIVGIFSSSFIGRMVDRYGYPKILVMNIFIVIAGALFTINNMLAVKILGIALFTFGFFGG
HSVASSWVGRRALHNKAQASSLYLFFYYAGSSVFGTIGGLFWSGFHWLGVVGMITFMLLVALWLSGYLARSVKMPDKRNE
KGLN
>Mature_403_residues
TYIRKGTPVFRKITFAFFAAGFNTFAILYCVQPLMEEFTREFHVTPTAASLSLSVTTMLLAVSMLVFGSLSEVWGRKPIM
GISMLAASVLCLASAFSPSFHTLLVLRTIQGVALAGLPSIAMAYLGEEIEPGSLGSAMGLYISGNAIGAVFGRIVSGLLS
EYLNWHMAMGTIGVISLIASVIFFINLPPSRHFTPRKLKLGKLGMSLIGHLRDRKLFSLFLIGFLLLGSNVALFNYIVYV
LLGPPYSLNKAFSSWIFIVMIVGIFSSSFIGRMVDRYGYPKILVMNIFIVIAGALFTINNMLAVKILGIALFTFGFFGGH
SVASSWVGRRALHNKAQASSLYLFFYYAGSSVFGTIGGLFWSGFHWLGVVGMITFMLLVALWLSGYLARSVKMPDKRNEK
GLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily

Homologues:

Organism=Escherichia coli, GI1787880, Length=391, Percent_Identity=43.2225063938619, Blast_Score=320, Evalue=1e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYBF_BACSU (P37498)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- PIR:   S65991
- RefSeq:   NP_391946.1
- ProteinModelPortal:   P37498
- EnsemblBacteria:   EBBACT00000001744
- GeneID:   937854
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40660
- NMPDR:   fig|224308.1.peg.4072
- GenoList:   BSU40660
- GeneTree:   EBGT00070000031967
- HOGENOM:   HBG699254
- OMA:   SSAVSHT
- PhylomeDB:   P37498
- ProtClustDB:   CLSK888202
- BioCyc:   BSUB:BSU40660-MONOMER
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196

Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter

EC number: NA

Molecular weight: Translated: 44182; Mature: 44051

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x138695a4)-; HASH(0x137fdbac)-; HASH(0x12ba23b4)-; HASH(0x13601c58)-; HASH(0x13d81e1c)-; HASH(0x135d8cdc)-; HASH(0x13d756e8)-; HASH(0x139d7334)-; HASH(0x127e42cc)-; HASH(0xf1c0f38)-; HASH(0x13d8786c)-; HASH(0x13950cdc)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
>Mature Secondary Structure 
TYIRKGTPVFRKITFAFFAAGFNTFAILYCVQPLMEEFTREFHVTPTAASLSLSVTTML
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LAVSMLVFGSLSEVWGRKPIMGISMLAASVLCLASAFSPSFHTLLVLRTIQGVALAGLPS
HHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHH
IAMAYLGEEIEPGSLGSAMGLYISGNAIGAVFGRIVSGLLSEYLNWHMAMGTIGVISLIA
HHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVIFFINLPPSRHFTPRKLKLGKLGMSLIGHLRDRKLFSLFLIGFLLLGSNVALFNYIVY
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VLLGPPYSLNKAFSSWIFIVMIVGIFSSSFIGRMVDRYGYPKILVMNIFIVIAGALFTIN
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NMLAVKILGIALFTFGFFGGHSVASSWVGRRALHNKAQASSLYLFFYYAGSSVFGTIGGL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHH
FWSGFHWLGVVGMITFMLLVALWLSGYLARSVKMPDKRNEKGLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377