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The map label for this gene is yybB

Identifier: 16081122

GI number: 16081122

Start: 4182636

End: 4183298

Strand: Reverse

Name: yybB

Synonym: BSU40700

Alternate gene names: 16081122

Gene position: 4183298-4182636 (Counterclockwise)

Preceding gene: 16081123

Following gene: 16081118

Centisome position: 99.23

GC content: 41.18

Gene sequence:

>663_bases
GTGAATTTGAGACAACTATCAGAACATGTCTTTCAATGTGAATTTGAGCTTGATGTGCCTCTTCGTATTCCGGTTCATAC
CTGGTTTATCAAAGATGGTGATGATGTTTATATTGTTGATACGGGAATAGAACGTTTTGCTGATGCTCAAATTAGGGCAG
CGTTAGCGATCGGCAATCCAAAAGCCATTTTGCTTACCCATGGCCACAGTGATCATATCGGGGGTGCATCAAAATGGTTA
GAGAGATTTGATATTCCGATTTTTGCGCACCAGAAAGAACTAAAGTACATCAATGGGGAAGAGCCATATCCGAACAAAAA
TGAAGTGGAGAACACAGGGGTAGCCCATATTGTACAGCCGCTGACGGAGCAAACGCTTGCTCATCTGCCTCTGAAATACT
ATTTAACACCTGGCCATTCGCCGGGGCATGTTGTGTATTATCATAAAATCGATCGTACGCTATTGACGGGCGACCTTTTT
ATCACAAGTAAGGAGGATTTACACCCACCTATAAGAAGATTCAGTGTTGATATAAATGAGAACATCGACAGCGGCTCAAT
CATAGATCAAATCAAACCAACGCTCATTTGCTCTTCACATGGCGAAGAAATCCTTTATAACGAAGAATTGTATAAAAACT
ATGTGGTAAGGTATAGGGATTAA

Upstream 100 bases:

>100_bases
TCCTCTCAAGAATCCAGTCAGCTCGAGCGTGGGTGAAAATAGTCCGTTCACTTCTGTTTTCTTTAAAACTATCAAAAAAT
TTCCACAGGAGATGGTTTGC

Downstream 100 bases:

>100_bases
TGGAAGTGAAAAACATAAGCTGAAAAATCTCCAGCATGGTGAAGCCCTCGATCCGATTTACTCACACCCAAAAAGAAAAA
ATGGCAGCTGCCTGCCGCAG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNLRQLSEHVFQCEFELDVPLRIPVHTWFIKDGDDVYIVDTGIERFADAQIRAALAIGNPKAILLTHGHSDHIGGASKWL
ERFDIPIFAHQKELKYINGEEPYPNKNEVENTGVAHIVQPLTEQTLAHLPLKYYLTPGHSPGHVVYYHKIDRTLLTGDLF
ITSKEDLHPPIRRFSVDINENIDSGSIIDQIKPTLICSSHGEEILYNEELYKNYVVRYRD

Sequences:

>Translated_220_residues
MNLRQLSEHVFQCEFELDVPLRIPVHTWFIKDGDDVYIVDTGIERFADAQIRAALAIGNPKAILLTHGHSDHIGGASKWL
ERFDIPIFAHQKELKYINGEEPYPNKNEVENTGVAHIVQPLTEQTLAHLPLKYYLTPGHSPGHVVYYHKIDRTLLTGDLF
ITSKEDLHPPIRRFSVDINENIDSGSIIDQIKPTLICSSHGEEILYNEELYKNYVVRYRD
>Mature_220_residues
MNLRQLSEHVFQCEFELDVPLRIPVHTWFIKDGDDVYIVDTGIERFADAQIRAALAIGNPKAILLTHGHSDHIGGASKWL
ERFDIPIFAHQKELKYINGEEPYPNKNEVENTGVAHIVQPLTEQTLAHLPLKYYLTPGHSPGHVVYYHKIDRTLLTGDLF
ITSKEDLHPPIRRFSVDINENIDSGSIIDQIKPTLICSSHGEEILYNEELYKNYVVRYRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYBB_BACSU (P37502)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- PIR:   S65995
- RefSeq:   NP_391950.1
- ProteinModelPortal:   P37502
- SMR:   P37502
- EnsemblBacteria:   EBBACT00000002495
- GeneID:   937880
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40700
- NMPDR:   fig|224308.1.peg.4076
- GenoList:   BSU40700
- GeneTree:   EBGT00050000000389
- HOGENOM:   HBG349046
- OMA:   YLTPGHS
- ProtClustDB:   CLSK307977
- BioCyc:   BSUB:BSU40700-MONOMER
- InterPro:   IPR001279
- SMART:   SM00849

Pfam domain/function: PF00753 Lactamase_B

EC number: NA

Molecular weight: Translated: 25267; Mature: 25267

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRQLSEHVFQCEFELDVPLRIPVHTWFIKDGDDVYIVDTGIERFADAQIRAALAIGNP
CCHHHHHHHHEEEEEECCCCEEECEEEEEEECCCEEEEEECCHHHHHCHHEEEEEEECCC
KAILLTHGHSDHIGGASKWLERFDIPIFAHQKELKYINGEEPYPNKNEVENTGVAHIVQP
CEEEEECCCCCCCCCHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
LTEQTLAHLPLKYYLTPGHSPGHVVYYHKIDRTLLTGDLFITSKEDLHPPIRRFSVDINE
HHHHHHHHCCEEEEECCCCCCCEEEEEEECCCEEEECEEEEECCHHCCCCHHHEEEECCC
NIDSGSIIDQIKPTLICSSHGEEILYNEELYKNYVVRYRD
CCCCCCHHHHCCCEEEECCCCCEEEECHHHHHCEEEEECC
>Mature Secondary Structure
MNLRQLSEHVFQCEFELDVPLRIPVHTWFIKDGDDVYIVDTGIERFADAQIRAALAIGNP
CCHHHHHHHHEEEEEECCCCEEECEEEEEEECCCEEEEEECCHHHHHCHHEEEEEEECCC
KAILLTHGHSDHIGGASKWLERFDIPIFAHQKELKYINGEEPYPNKNEVENTGVAHIVQP
CEEEEECCCCCCCCCHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
LTEQTLAHLPLKYYLTPGHSPGHVVYYHKIDRTLLTGDLFITSKEDLHPPIRRFSVDINE
HHHHHHHHCCEEEEECCCCCCCEEEEEEECCCEEEECEEEEECCHHCCCCHHHEEEECCC
NIDSGSIIDQIKPTLICSSHGEEILYNEELYKNYVVRYRD
CCCCCCHHHHCCCEEEECCCCCEEEECHHHHHCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377