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The map label for this gene is ywaE

Identifier: 16080896

GI number: 16080896

Start: 3946394

End: 3946909

Strand: Direct

Name: ywaE

Synonym: BSU38450

Alternate gene names: 16080896

Gene position: 3946394-3946909 (Clockwise)

Preceding gene: 16080893

Following gene: 16080897

Centisome position: 93.61

GC content: 45.74

Gene sequence:

>516_bases
ATGGAACGTTCACATCAACATCAGCAGCTTCGGAAGGAAGAACACGATACACTTTCTAAGCTCAAACAAATGCCCGTCGA
GTCACTCAACCTGGAAGCCATTTCGATCGCTACGAATCTGTATCGGTCTGCACAAAGGCTCCGTGTCAAAATGGAGACTG
AGGTTCTTTCTACCTATAACCTTTCTTGGACCGCTTTCTCCATTCTTTATGATCTATGGGTATGGGGAGCGCTCGAAACG
AGAAAAATCGCTGAGCTGTCAGGGATATCTACAGCTACAGCAAGCAACGTGATCAAAACGCTCGAAAAAAAGAGTTTTTG
CCGTAAAAGCATCGACACAAGAGATCGGCGACTCGTGTTTGTCTCAATCACCGATTCCGGCAAACAAGCGATCGAAGAAC
TCTACCCGGAGTTTCACAAAGGGGAAACAGAGCTCATTGCGGGAATGACGAAGGACGAACAGAAAATATTGACAGGGCTG
CTTAGAAAGGTAGCTGACAATCTTCATACAACATAA

Upstream 100 bases:

>100_bases
TTTTTTATTCAACCGATATATGGGCTTGAAGTTCACACCAGACTCTGTTAAAATTCGTTTCATAGCTAATGATTCTGATA
ATTTAAGGCAGGCCTAAAAA

Downstream 100 bases:

>100_bases
GCTTTGACGGGAATCCAGTAGCGGTTTGTCTCCCTGTTTCAGAGAGCCGGCGGTAGGTGCGAGCCGGCGCACAGGCAAAC
GTGAATTACCTCCCCAAGCT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MERSHQHQQLRKEEHDTLSKLKQMPVESLNLEAISIATNLYRSAQRLRVKMETEVLSTYNLSWTAFSILYDLWVWGALET
RKIAELSGISTATASNVIKTLEKKSFCRKSIDTRDRRLVFVSITDSGKQAIEELYPEFHKGETELIAGMTKDEQKILTGL
LRKVADNLHTT

Sequences:

>Translated_171_residues
MERSHQHQQLRKEEHDTLSKLKQMPVESLNLEAISIATNLYRSAQRLRVKMETEVLSTYNLSWTAFSILYDLWVWGALET
RKIAELSGISTATASNVIKTLEKKSFCRKSIDTRDRRLVFVSITDSGKQAIEELYPEFHKGETELIAGMTKDEQKILTGL
LRKVADNLHTT
>Mature_171_residues
MERSHQHQQLRKEEHDTLSKLKQMPVESLNLEAISIATNLYRSAQRLRVKMETEVLSTYNLSWTAFSILYDLWVWGALET
RKIAELSGISTATASNVIKTLEKKSFCRKSIDTRDRRLVFVSITDSGKQAIEELYPEFHKGETELIAGMTKDEQKILTGL
LRKVADNLHTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWAE_BACSU (P25150)

Other databases:

- EMBL:   X52480
- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S16425
- RefSeq:   NP_391724.1
- ProteinModelPortal:   P25150
- SMR:   P25150
- EnsemblBacteria:   EBBACT00000000256
- GeneID:   937344
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38450
- NMPDR:   fig|224308.1.peg.3850
- GenoList:   BSU38450
- GeneTree:   EBGT00050000001104
- HOGENOM:   HBG344819
- OMA:   SWPGFRV
- ProtClustDB:   CLSK561393
- BioCyc:   BSUB:BSU38450-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 19640; Mature: 19640

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSHQHQQLRKEEHDTLSKLKQMPVESLNLEAISIATNLYRSAQRLRVKMETEVLSTYN
CCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSWTAFSILYDLWVWGALETRKIAELSGISTATASNVIKTLEKKSFCRKSIDTRDRRLVF
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
VSITDSGKQAIEELYPEFHKGETELIAGMTKDEQKILTGLLRKVADNLHTT
EEECCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MERSHQHQQLRKEEHDTLSKLKQMPVESLNLEAISIATNLYRSAQRLRVKMETEVLSTYN
CCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSWTAFSILYDLWVWGALETRKIAELSGISTATASNVIKTLEKKSFCRKSIDTRDRRLVF
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
VSITDSGKQAIEELYPEFHKGETELIAGMTKDEQKILTGLLRKVADNLHTT
EEECCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1806041; 7934828; 9384377