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The map label for this gene is ywkB

Identifier: 16080757

GI number: 16080757

Start: 3799377

End: 3800336

Strand: Reverse

Name: ywkB

Synonym: BSU37040

Alternate gene names: 16080757

Gene position: 3800336-3799377 (Counterclockwise)

Preceding gene: 16080758

Following gene: 16080754

Centisome position: 90.15

GC content: 43.02

Gene sequence:

>960_bases
TTGAGCATCTTAGATATCTTAATCCTCCTGGCGCCGATCTTCTTTGTTATCGTGCTGGGTTGGTTTGCAGGACATTTTGG
AAGTTATGATGCCAAGTCGGCAAAAGGGGTAAGTACGTTAGTAACGAAATACGCACTTCCAGCTCACTTTATCGCTGGTA
TTTTGACAACTTCCAGAAGTGAATTTTTATCACAAGTACCTTTAATGATTTCTTTAATTATTGGGATTGTTGGTTTCTAT
ATCATCATTCTTTTGGTTTGCAGATTTATATTCAAGTATGATTTAACGAACTCATCTGTATTTTCTTTGAACTCTGCACA
GCCGACATTCGCATTTATGGGTATCCCGGTATTGGGAAGCTTATTCGGAGCGAATGAAGTTGCGATTCCGATCGCGGTCA
CAGGTATCGTGGTTAACGCGATTCTTGATCCGCTCGCGATCATTATCGCTACTGTTGGTGAGTCTTCTAAGAAAAACGAA
GAGAGTGGCGACAGCTTCTGGAAGATGACAGGAAAATCAATCCTGCATGGTCTTTGTGAGCCGCTTGCAGCTGCTCCGTT
AATCAGTATGATCTTGGTGCTGGTTTTCAATTTCACTCTTCCTGAGCTGGGTGTTAAAATGCTTGATCAGCTTGGAAGCA
CAACATCTGGTGTTGCTCTCTTCGCTGTTGGTGTTACCGTTGGTATTCGTAAAATTAAACTCAGTATGCCGGCTATCGGT
ATTGCGTTACTAAAAGTTGCGGTTCAGCCTGCGTTAATGTTCCTGATTGCTCTTGCTATCGGACTTCCAGCTGACCAAAC
AACAAAAGCAATCCTTCTTGTTGCATTCCCTGGTTCTGCCGTTGCAGCCATGATTGCGACTCGTTTCGAGAAACAAGAAG
AAGAAACTGCAACTGCGTTTGTGGTCAGTGCGATTCTGTCATTGATTTCACTTCCAATCATTATCGCGCTTACTGCGTAA

Upstream 100 bases:

>100_bases
AAAAGTCATCGCGAAATAATTAGCGAGTAAATTTTTCTGTCCGAGGGAAAGCTTTTTGTAAAGCTAAAGTATACGGACAT
AGGATTTGGAGGAGAATATT

Downstream 100 bases:

>100_bases
CAAAAAAAGCTCCCTTTAAGGGAGCTTTTTGCTTTAGGTTTGAAATTTGAACAGTGACAGCAGCGGTTTTTTTCTTGTTT
TGGTTTTTTCAGAAGCAGCA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSILDILILLAPIFFVIVLGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRSEFLSQVPLMISLIIGIVGFY
IIILLVCRFIFKYDLTNSSVFSLNSAQPTFAFMGIPVLGSLFGANEVAIPIAVTGIVVNAILDPLAIIIATVGESSKKNE
ESGDSFWKMTGKSILHGLCEPLAAAPLISMILVLVFNFTLPELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIG
IALLKVAVQPALMFLIALAIGLPADQTTKAILLVAFPGSAVAAMIATRFEKQEEETATAFVVSAILSLISLPIIIALTA

Sequences:

>Translated_319_residues
MSILDILILLAPIFFVIVLGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRSEFLSQVPLMISLIIGIVGFY
IIILLVCRFIFKYDLTNSSVFSLNSAQPTFAFMGIPVLGSLFGANEVAIPIAVTGIVVNAILDPLAIIIATVGESSKKNE
ESGDSFWKMTGKSILHGLCEPLAAAPLISMILVLVFNFTLPELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIG
IALLKVAVQPALMFLIALAIGLPADQTTKAILLVAFPGSAVAAMIATRFEKQEEETATAFVVSAILSLISLPIIIALTA
>Mature_318_residues
SILDILILLAPIFFVIVLGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRSEFLSQVPLMISLIIGIVGFYI
IILLVCRFIFKYDLTNSSVFSLNSAQPTFAFMGIPVLGSLFGANEVAIPIAVTGIVVNAILDPLAIIIATVGESSKKNEE
SGDSFWKMTGKSILHGLCEPLAAAPLISMILVLVFNFTLPELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIGI
ALLKVAVQPALMFLIALAIGLPADQTTKAILLVAFPGSAVAAMIATRFEKQEEETATAFVVSAILSLISLPIIIALTA

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family

Homologues:

Organism=Escherichia coli, GI1788715, Length=309, Percent_Identity=26.2135922330097, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWKB_BACSU (P45869)

Other databases:

- EMBL:   Z49782
- EMBL:   AL009126
- PIR:   S55434
- RefSeq:   NP_391585.1
- ProteinModelPortal:   P45869
- EnsemblBacteria:   EBBACT00000002460
- GeneID:   936875
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37040
- NMPDR:   fig|224308.1.peg.3711
- GenoList:   BSU37040
- GeneTree:   EBGT00050000001028
- HOGENOM:   HBG338410
- OMA:   MIATRFE
- PhylomeDB:   P45869
- ProtClustDB:   CLSK888051
- BioCyc:   BSUB:BSU37040-MONOMER
- InterPro:   IPR004776
- InterPro:   IPR014024
- TIGRFAMs:   TIGR00946

Pfam domain/function: PF03547 Mem_trans

EC number: NA

Molecular weight: Translated: 33642; Mature: 33511

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12c0d394)-; HASH(0x12ec1088)-; HASH(0x12f640ec)-; HASH(0x12bcd0f4)-; HASH(0x12808b44)-; HASH(0x12f524d8)-; HASH(0x1254c2b8)-; HASH(0x1291f0b8)-; HASH(0x12f3f78c)-; HASH(0x12b9571c)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILDILILLAPIFFVIVLGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EFLSQVPLMISLIIGIVGFYIIILLVCRFIFKYDLTNSSVFSLNSAQPTFAFMGIPVLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH
LFGANEVAIPIAVTGIVVNAILDPLAIIIATVGESSKKNEESGDSFWKMTGKSILHGLCE
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PLAAAPLISMILVLVFNFTLPELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCHHH
IALLKVAVQPALMFLIALAIGLPADQTTKAILLVAFPGSAVAAMIATRFEKQEEETATAF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
VVSAILSLISLPIIIALTA
HHHHHHHHHHHHHHHEECH
>Mature Secondary Structure 
SILDILILLAPIFFVIVLGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EFLSQVPLMISLIIGIVGFYIIILLVCRFIFKYDLTNSSVFSLNSAQPTFAFMGIPVLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH
LFGANEVAIPIAVTGIVVNAILDPLAIIIATVGESSKKNEESGDSFWKMTGKSILHGLCE
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PLAAAPLISMILVLVFNFTLPELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCHHH
IALLKVAVQPALMFLIALAIGLPADQTTKAILLVAFPGSAVAAMIATRFEKQEEETATAF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
VVSAILSLISLPIIIALTA
HHHHHHHHHHHHHHHEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377