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The map label for this gene is rbsR

Identifier: 16080644

GI number: 16080644

Start: 3701411

End: 3702391

Strand: Direct

Name: rbsR

Synonym: BSU35910

Alternate gene names: 16080644

Gene position: 3701411-3702391 (Clockwise)

Preceding gene: 16080638

Following gene: 16080645

Centisome position: 87.8

GC content: 47.81

Gene sequence:

>981_bases
TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGCGACGGTTTCCCGCAACCTGAATGATAACGGCTA
TGTACACGAAGAAACGCGAACGCGTGTCATAGCGGCGATGGCGAAGCTGAACTATTACCCGAATGAAGTCGCCAGATCTC
TATATAAAAGAGAATCCCGACTGATCGGACTTTTGCTCCCGGATATCACAAACCCTTTCTTCCCCCAGCTTGCCCGCGGT
GCGGAGGATGAATTGAACCGGGAAGGCTATCGCCTTATTTTCGGCAACAGTGACGAGGAATTGAAAAAAGAACTTGAATA
CCTTCAAACCTTTAAGCAAAATCATGTCGCAGGCATTATTGCCGCAACGAATTACCCGGATCTCGAGGAATACAGCGGCA
TGAATTATCCAGTTGTTTTTCTGGACAGAACGCTTGAAGGGGCTCCTTCTGTGTCCAGTGACGGCTATACAGGAGTAAAG
TTAGCCGCCCAGGCTATCATTCACGGAAAAAGCCAGCGCATTACGCTCTTGAGAGGACCCGCTCACCTGCCGACCGCTCA
AGACCGATTTAACGGCGCTTTGGAAATCTTAAAGCAGGCTGAAGTTGATTTTCAGGTCATTGAGACAGCTTCATTTTCAA
TTAAAGATGCACAATCGATGGCGAAGGAGCTGTTTGCCTCTTATCCAGCGACAGATGGTGTGATCGCGAGTAATGATATT
CAAGCCGCTGCCGTTTTACATGAAGCATTGCGGCGCGGAAAAAACGTGCCGGAGGACATTCAAATTATCGGCTATGATGA
CATTCCGCAAAGCGGACTTCTGTTCCCGCCACTTTCTACAATTAAACAGCCCGCATATGATATGGGGAAAGAAGCTGCCA
AACTGCTTTTGGGTATCATTAAAAAACAGCCGCTGGCAGAAACGGCAATTCAAATGCCTGTCACCTATATAGGAAGAAAG
ACGACAAGAAAGGAAGATTAA

Upstream 100 bases:

>100_bases
AATTTACAATTAGATTTCTTTTGATATTTTTATTGCTAACTTCGGATTGTTCATGATAATCTATCTATGTAAACGGTTAC
ATAAACAAGGAGGAGCTGTT

Downstream 100 bases:

>100_bases
GATGCGTAATATTTGTGTGATTGGTAGCTGTTCTATGGATTTAGTGGTCACCTCGGACAAACGCCCAAAAGCCGGTGAAA
CGGTTCTTGGCACGTCATTT

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MATIKDVAGAAGVSVATVSRNLNDNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKRESRLIGLLLPDITNPFFPQLARG
AEDELNREGYRLIFGNSDEELKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVK
LAAQAIIHGKSQRITLLRGPAHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASYPATDGVIASNDI
QAAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGKEAAKLLLGIIKKQPLAETAIQMPVTYIGRK
TTRKED

Sequences:

>Translated_326_residues
MATIKDVAGAAGVSVATVSRNLNDNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKRESRLIGLLLPDITNPFFPQLARG
AEDELNREGYRLIFGNSDEELKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVK
LAAQAIIHGKSQRITLLRGPAHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASYPATDGVIASNDI
QAAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGKEAAKLLLGIIKKQPLAETAIQMPVTYIGRK
TTRKED
>Mature_325_residues
ATIKDVAGAAGVSVATVSRNLNDNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKRESRLIGLLLPDITNPFFPQLARGA
EDELNREGYRLIFGNSDEELKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVKL
AAQAIIHGKSQRITLLRGPAHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASYPATDGVIASNDIQ
AAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGKEAAKLLLGIIKKQPLAETAIQMPVTYIGRKT
TRKED

Specific function: Transcriptional repressor for the ribose rbsDACBK operon

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790369, Length=331, Percent_Identity=31.4199395770393, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790194, Length=324, Percent_Identity=31.4814814814815, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787948, Length=333, Percent_Identity=30.6306306306306, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789202, Length=328, Percent_Identity=29.5731707317073, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788474, Length=304, Percent_Identity=30.5921052631579, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1786540, Length=332, Percent_Identity=28.3132530120482, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789068, Length=304, Percent_Identity=28.6184210526316, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787580, Length=316, Percent_Identity=25.6329113924051, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI48994940, Length=320, Percent_Identity=26.875, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790715, Length=307, Percent_Identity=24.7557003257329, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787906, Length=337, Percent_Identity=27.0029673590504, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786268, Length=304, Percent_Identity=23.0263157894737, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790192, Length=219, Percent_Identity=26.4840182648402, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSR_BACSU (P36944)

Other databases:

- EMBL:   Z25798
- EMBL:   Z92953
- EMBL:   AL009126
- PIR:   E69690
- RefSeq:   NP_391472.1
- ProteinModelPortal:   P36944
- SMR:   P36944
- EnsemblBacteria:   EBBACT00000001406
- GeneID:   936836
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35910
- NMPDR:   fig|224308.1.peg.3598
- GenoList:   BSU35910
- GeneTree:   EBGT00070000031796
- HOGENOM:   HBG753640
- OMA:   LYKRESR
- ProtClustDB:   CLSK887988
- BioCyc:   BSUB:BSU35910-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761
- PRINTS:   PR00036
- SMART:   SM00354

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 35856; Mature: 35725

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00356 HTH_LACI_1; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKDVAGAAGVSVATVSRNLNDNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKRESR
CCCHHHHHCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLLLPDITNPFFPQLARGAEDELNREGYRLIFGNSDEELKKELEYLQTFKQNHVAGII
EEEEECCCCCCCHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
AATNYPDLEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVKLAAQAIIHGKSQRITLLRGP
EECCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC
AHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASYPATDGVIASNDI
CCCCCHHHHHHHHHHHHHHHCCCCEEEHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCH
QAAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGKEAAKLLLGII
HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHH
KKQPLAETAIQMPVTYIGRKTTRKED
HCCCHHHHHHHCCHHHHCCCCCCCCC
>Mature Secondary Structure 
ATIKDVAGAAGVSVATVSRNLNDNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKRESR
CCHHHHHCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLLLPDITNPFFPQLARGAEDELNREGYRLIFGNSDEELKKELEYLQTFKQNHVAGII
EEEEECCCCCCCHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
AATNYPDLEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVKLAAQAIIHGKSQRITLLRGP
EECCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC
AHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASYPATDGVIASNDI
CCCCCHHHHHHHHHHHHHHHCCCCEEEHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCH
QAAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGKEAAKLLLGII
HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHH
KKQPLAETAIQMPVTYIGRKTTRKED
HCCCHHHHHHHCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377