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The map label for this gene is ganQ

Identifier: 16080467

GI number: 16080467

Start: 3505102

End: 3505953

Strand: Reverse

Name: ganQ

Synonym: BSU34140

Alternate gene names: 16080467

Gene position: 3505953-3505102 (Counterclockwise)

Preceding gene: 16080468

Following gene: 16080466

Centisome position: 83.17

GC content: 46.24

Gene sequence:

>852_bases
ATGCTGGCAGATATGAAAGTCAGAAGATATATCCGTCTCCTTTTCTCTTACTTGTTGCTAGCCTTTATGGCGGTCATCAT
TGTTTATCCTCTCCTTTGGACGGCAGGCGCAAGCTTTAATCCCGGCAACAGCTTAATCAGTACATCCATCATTCCGAAGC
ATCCGACATTCGATCATTACAAGGAATTATTTGCGGGCAAGGAAAGCCTTCAATATGTGCAGTGGTATGTCAACTCTATG
AAGATCAGCCTGTTTACAATGGCAGGGTCTTTGCTCTGTGTGACGTTTACGGCCTATGCGTTTTCGCGCTTTCGGTTTAA
AGGGAGGAAATACGCTTTAACGCTCTTTTTATTGCTGCAGATGATTCCTCAGTTTTCAGCTTTAATTGCCTTGTTTGTGC
TGGCGCAAATCTTGGGAATGATCAATAGCCACTGGCTGCTAATCTTGCTTTATATCGGCGGCCTGATCCCGATGAATACG
TATTTGATGAAAGGGTACATGGATTCCATTCCGATGGATTTAGACGAAAGCGCCAAGATTGACGGAGCCAGCAGCACCAG
AATCTTCTTCCAGATCATTCTGCCATTATCAAAACCGATGGCGGCAGTCGTGGCCATGAACGGCTTTACCGGTCCGCTCG
GAGATTTTGTGCTGTCCTCAACCATATTGAGAACGCCTGAATCATATACATTGCCCGTCGGTCTATTCAATTTAGTGAAT
GATGTCATGGGGGCCAGCTATACGACATTTGCGGCCGGAGCCCTGCTTATCAGCATACCGGTTGCCGTCATCTTTATTAT
GCTGCAAAAGAATTTTGTGTCCGGATTAACCGCAGGCGGAACGAAGGGCTAA

Upstream 100 bases:

>100_bases
ACTTGCTGCGGCTTTAACCATTTTATTATCTGTATTTGTTATCTCCATCGCATTGTGGCAGTTCAGACAGACAAAGTCTT
TTAAAGAGGAGGCATAAGGT

Downstream 100 bases:

>100_bases
GAGAACAAGGAGGAGAATGTGATGTCAAAGCTTGAAAAAACGCACGTAACAAAAGCAAAATTTATGCTCCATGGGGGAGA
CTACAACCCCGATCAGTGGC

Product: arabinogalactan oligomer permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MLADMKVRRYIRLLFSYLLLAFMAVIIVYPLLWTAGASFNPGNSLISTSIIPKHPTFDHYKELFAGKESLQYVQWYVNSM
KISLFTMAGSLLCVTFTAYAFSRFRFKGRKYALTLFLLLQMIPQFSALIALFVLAQILGMINSHWLLILLYIGGLIPMNT
YLMKGYMDSIPMDLDESAKIDGASSTRIFFQIILPLSKPMAAVVAMNGFTGPLGDFVLSSTILRTPESYTLPVGLFNLVN
DVMGASYTTFAAGALLISIPVAVIFIMLQKNFVSGLTAGGTKG

Sequences:

>Translated_283_residues
MLADMKVRRYIRLLFSYLLLAFMAVIIVYPLLWTAGASFNPGNSLISTSIIPKHPTFDHYKELFAGKESLQYVQWYVNSM
KISLFTMAGSLLCVTFTAYAFSRFRFKGRKYALTLFLLLQMIPQFSALIALFVLAQILGMINSHWLLILLYIGGLIPMNT
YLMKGYMDSIPMDLDESAKIDGASSTRIFFQIILPLSKPMAAVVAMNGFTGPLGDFVLSSTILRTPESYTLPVGLFNLVN
DVMGASYTTFAAGALLISIPVAVIFIMLQKNFVSGLTAGGTKG
>Mature_283_residues
MLADMKVRRYIRLLFSYLLLAFMAVIIVYPLLWTAGASFNPGNSLISTSIIPKHPTFDHYKELFAGKESLQYVQWYVNSM
KISLFTMAGSLLCVTFTAYAFSRFRFKGRKYALTLFLLLQMIPQFSALIALFVLAQILGMINSHWLLILLYIGGLIPMNT
YLMKGYMDSIPMDLDESAKIDGASSTRIFFQIILPLSKPMAAVVAMNGFTGPLGDFVLSSTILRTPESYTLPVGLFNLVN
DVMGASYTTFAAGALLISIPVAVIFIMLQKNFVSGLTAGGTKG

Specific function: Could be part of a binding-protein-dependent transport system for arabinogalactan oligomers; probably responsible for the translocation of the substrate across the membrane

COG id: COG3833

COG function: function code G; ABC-type maltose transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1790464, Length=288, Percent_Identity=34.0277777777778, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787571, Length=269, Percent_Identity=28.2527881040892, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787368, Length=223, Percent_Identity=25.5605381165919, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GANQ_BACSU (O07011)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   E70038
- RefSeq:   NP_391294.1
- ProteinModelPortal:   O07011
- SMR:   O07011
- EnsemblBacteria:   EBBACT00000003726
- GeneID:   937991
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34140
- NMPDR:   fig|224308.1.peg.3420
- GenoList:   BSU34140
- GeneTree:   EBGT00050000000646
- HOGENOM:   HBG729451
- OMA:   GGMIPMN
- PhylomeDB:   O07011
- ProtClustDB:   CLSK2517440
- BioCyc:   BSUB:BSU34140-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 31306; Mature: 31306

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x127cb160)-; HASH(0x40c1de78)-; HASH(0x128225f0)-; HASH(0x11bb1a24)-; HASH(0x11eca070)-; HASH(0x40c1df38)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLADMKVRRYIRLLFSYLLLAFMAVIIVYPLLWTAGASFNPGNSLISTSIIPKHPTFDHY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHH
KELFAGKESLQYVQWYVNSMKISLFTMAGSLLCVTFTAYAFSRFRFKGRKYALTLFLLLQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
MIPQFSALIALFVLAQILGMINSHWLLILLYIGGLIPMNTYLMKGYMDSIPMDLDESAKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DGASSTRIFFQIILPLSKPMAAVVAMNGFTGPLGDFVLSSTILRTPESYTLPVGLFNLVN
CCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
DVMGASYTTFAAGALLISIPVAVIFIMLQKNFVSGLTAGGTKG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure
MLADMKVRRYIRLLFSYLLLAFMAVIIVYPLLWTAGASFNPGNSLISTSIIPKHPTFDHY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHH
KELFAGKESLQYVQWYVNSMKISLFTMAGSLLCVTFTAYAFSRFRFKGRKYALTLFLLLQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
MIPQFSALIALFVLAQILGMINSHWLLILLYIGGLIPMNTYLMKGYMDSIPMDLDESAKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DGASSTRIFFQIILPLSKPMAAVVAMNGFTGPLGDFVLSSTILRTPESYTLPVGLFNLVN
CCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
DVMGASYTTFAAGALLISIPVAVIFIMLQKNFVSGLTAGGTKG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377