| Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
|---|---|
| Accession | NC_000964 |
| Length | 4,215,606 |
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The map label for this gene is ganA
Identifier: 16080466
GI number: 16080466
Start: 3503020
End: 3505083
Strand: Reverse
Name: ganA
Synonym: BSU34130
Alternate gene names: 16080466
Gene position: 3505083-3503020 (Counterclockwise)
Preceding gene: 16080467
Following gene: 50812295
Centisome position: 83.15
GC content: 48.59
Gene sequence:
>2064_bases GTGATGTCAAAGCTTGAAAAAACGCACGTAACAAAAGCAAAATTTATGCTCCATGGGGGAGACTACAACCCCGATCAGTG GCTGGATCGGCCCGATATTTTAGCTGACGATATCAAACTGATGAAGCTTTCTCATACGAATACGTTTTCTGTCGGCATTT TTGCATGGAGCGCACTTGAGCCGGAGGAGGGCGTATATCAATTTGAATGGCTGGATGATATTTTTGAGCGGATTCACAGT ATAGGCGGCCGGGTCATATTAGCAACGCCGAGCGGAGCCCGTCCGGCCTGGCTGTCGCAAACCTATCCGGAAGTTTTGCG CGTCAATGCCTCCCGCGTCAAACAGCTGCACGGCGGAAGGCACAACCACTGCCTCACATCTAAAGTCTACCGAGAAAAAA CACGGCACATCAACCGCTTATTAGCAGAACGATACGGACATCACCCGGCGCTGTTAATGTGGCACATTTCAAACGAATAC GGGGGAGATTGCCACTGTGATTTATGCCAGCATGCTTTCCGGGAGTGGCTGAAATCGAAATATGACAACAGCCTCAAGAC ATTGAACCATGCGTGGTGGACCCCTTTTTGGAGCCATACGTTCAATGACTGGTCACAAATTGAAAGCCCTTCGCCGATCG GTGAAAATGGCTTGCATGGCCTGAATTTAGATTGGCGCCGGTTCGTCACCGATCAAACGATTTCGTTTTATGAAAATGAA ATCATTCCGCTGAAAGAATTGACGCCTGATATCCCTATCACAACGAATTTTATGGCTGACACACCGGATTTGATCCCGTA TCAGGGCCTCGACTACAGCAAATTTGCAAAGCATGTCGATGCCATCAGCTGGGACGCTTATCCTGTCTGGCACAATGACT GGGAAAGCACAGCTGATTTGGCGATGAAGGTCGGCTTTATCAATGATCTGTACCGAAGCTTGAAGCAGCAGCCCTTCTTA TTAATGGAGTGTACGCCAAGCGCGGTCAATTGGCATAACGTCAACAAGGCAAAGCGCCCGGGCATGAATCTGCTGTCATC CATGCAAATGATTGCCCACGGCTCGGACAGCGTTCTCTATTTCCAATACCGCAAATCACGGGGGTCATCAGAAAAATTAC ACGGAGCGGTTGTGGATCATGACAATAGCCCGAAGAACCGCGTCTTTCAAGAAGTGGCCAAGGTAGGCGAGACATTGGAA CGGCTGTCCGAAGTTGTCGGAACGAAGAGGCCGGCTCAAACCGCGATTTTATATGACTGGGAAAATCATTGGGCGCTCGA GGATGCTCAGGGGTTTGCGAAGGCGACAAAACGTTATCCGCAAACGCTTCAGCAGCATTACCGCACATTCTGGGAACACG ATATCCCTGTCGACGTCATCACGAAAGAACAAGACTTTTCACCATATAAACTGCTGATCGTCCCGATGCTGTATTTAATC AGCGAGGACACCGTTTCCCGTTTAAAAGCGTTTACGGCTGACGGCGGCACCTTAGTCATGACGTATATCAGCGGGGTTGT GAATGAGCATGACTTAACATACACAGGCGGATGGCATCCGGATCTTCAAGCTATATTTGGAGTTGAGCCTCTTGAAACGG ACACCCTGTATCCGAAGGATCGAAACGCTGTCAGCTACCGCAGCCAAATATATGAAATGAAGGATTATGCAACCGTGATT GATGTAAAGACAGCTTCAGTGGAAGCGGTGTATCAAGAAGATTTTTATGCGCGCACGCCAGCGGTCACAAGCCATGAGTA TCAGCAGGGCAAGGCGTATTTTATCGGCGCGCGTTTGGAGGATCAATTTCAGCGTGATTTCTATGAGGGTCTGATCACAG ACCTGTCTCTCTCTCCAGTTTTTCCGGTTCGGCACGGAAAAGGCGTCTCCGTACAAGCGAGGCAGGATCAGGACAATGAT TATATTTTTGTCATGAATTTCACGGAAGAAAAACAGCTGGTCACGTTTGATCAGAGTGTGAAGGACATAATGACAGGAGA CATATTGTCAGGCGACCTGACGATGGAAAAGTATGAAGTGAGAATTGTCGTAAACACACATTAG
Upstream 100 bases:
>100_bases CAGCATACCGGTTGCCGTCATCTTTATTATGCTGCAAAAGAATTTTGTGTCCGGATTAACCGCAGGCGGAACGAAGGGCT AAGAGAACAAGGAGGAGAAT
Downstream 100 bases:
>100_bases GCTGATGCTCCGCTCGATATGGGCGGATTCTTTTTTCTATAGAATGAAAACGCTTGCTAAGTCTTGGGGGGATGAAATCA TGAAAAGCAAAGTGAAAATG
Product: arabinogalactan type I oligomer exo-hydrolase
Products: NA
Alternate protein names: Beta-gal; Beta-1,4-galactooligomerase; Galactooligomerase [H]
Number of amino acids: Translated: 687; Mature: 687
Protein sequence:
>687_residues MMSKLEKTHVTKAKFMLHGGDYNPDQWLDRPDILADDIKLMKLSHTNTFSVGIFAWSALEPEEGVYQFEWLDDIFERIHS IGGRVILATPSGARPAWLSQTYPEVLRVNASRVKQLHGGRHNHCLTSKVYREKTRHINRLLAERYGHHPALLMWHISNEY GGDCHCDLCQHAFREWLKSKYDNSLKTLNHAWWTPFWSHTFNDWSQIESPSPIGENGLHGLNLDWRRFVTDQTISFYENE IIPLKELTPDIPITTNFMADTPDLIPYQGLDYSKFAKHVDAISWDAYPVWHNDWESTADLAMKVGFINDLYRSLKQQPFL LMECTPSAVNWHNVNKAKRPGMNLLSSMQMIAHGSDSVLYFQYRKSRGSSEKLHGAVVDHDNSPKNRVFQEVAKVGETLE RLSEVVGTKRPAQTAILYDWENHWALEDAQGFAKATKRYPQTLQQHYRTFWEHDIPVDVITKEQDFSPYKLLIVPMLYLI SEDTVSRLKAFTADGGTLVMTYISGVVNEHDLTYTGGWHPDLQAIFGVEPLETDTLYPKDRNAVSYRSQIYEMKDYATVI DVKTASVEAVYQEDFYARTPAVTSHEYQQGKAYFIGARLEDQFQRDFYEGLITDLSLSPVFPVRHGKGVSVQARQDQDND YIFVMNFTEEKQLVTFDQSVKDIMTGDILSGDLTMEKYEVRIVVNTH
Sequences:
>Translated_687_residues MMSKLEKTHVTKAKFMLHGGDYNPDQWLDRPDILADDIKLMKLSHTNTFSVGIFAWSALEPEEGVYQFEWLDDIFERIHS IGGRVILATPSGARPAWLSQTYPEVLRVNASRVKQLHGGRHNHCLTSKVYREKTRHINRLLAERYGHHPALLMWHISNEY GGDCHCDLCQHAFREWLKSKYDNSLKTLNHAWWTPFWSHTFNDWSQIESPSPIGENGLHGLNLDWRRFVTDQTISFYENE IIPLKELTPDIPITTNFMADTPDLIPYQGLDYSKFAKHVDAISWDAYPVWHNDWESTADLAMKVGFINDLYRSLKQQPFL LMECTPSAVNWHNVNKAKRPGMNLLSSMQMIAHGSDSVLYFQYRKSRGSSEKLHGAVVDHDNSPKNRVFQEVAKVGETLE RLSEVVGTKRPAQTAILYDWENHWALEDAQGFAKATKRYPQTLQQHYRTFWEHDIPVDVITKEQDFSPYKLLIVPMLYLI SEDTVSRLKAFTADGGTLVMTYISGVVNEHDLTYTGGWHPDLQAIFGVEPLETDTLYPKDRNAVSYRSQIYEMKDYATVI DVKTASVEAVYQEDFYARTPAVTSHEYQQGKAYFIGARLEDQFQRDFYEGLITDLSLSPVFPVRHGKGVSVQARQDQDND YIFVMNFTEEKQLVTFDQSVKDIMTGDILSGDLTMEKYEVRIVVNTH >Mature_687_residues MMSKLEKTHVTKAKFMLHGGDYNPDQWLDRPDILADDIKLMKLSHTNTFSVGIFAWSALEPEEGVYQFEWLDDIFERIHS IGGRVILATPSGARPAWLSQTYPEVLRVNASRVKQLHGGRHNHCLTSKVYREKTRHINRLLAERYGHHPALLMWHISNEY GGDCHCDLCQHAFREWLKSKYDNSLKTLNHAWWTPFWSHTFNDWSQIESPSPIGENGLHGLNLDWRRFVTDQTISFYENE IIPLKELTPDIPITTNFMADTPDLIPYQGLDYSKFAKHVDAISWDAYPVWHNDWESTADLAMKVGFINDLYRSLKQQPFL LMECTPSAVNWHNVNKAKRPGMNLLSSMQMIAHGSDSVLYFQYRKSRGSSEKLHGAVVDHDNSPKNRVFQEVAKVGETLE RLSEVVGTKRPAQTAILYDWENHWALEDAQGFAKATKRYPQTLQQHYRTFWEHDIPVDVITKEQDFSPYKLLIVPMLYLI SEDTVSRLKAFTADGGTLVMTYISGVVNEHDLTYTGGWHPDLQAIFGVEPLETDTLYPKDRNAVSYRSQIYEMKDYATVI DVKTASVEAVYQEDFYARTPAVTSHEYQQGKAYFIGARLEDQFQRDFYEGLITDLSLSPVFPVRHGKGVSVQARQDQDND YIFVMNFTEEKQLVTFDQSVKDIMTGDILSGDLTMEKYEVRIVVNTH
Specific function: Hydrolyzes oligosaccharides released by the endo-1,4- beta-galactosidase galA from arabinogalactan type I, a pectic plant polysaccharide. It is unable to use lactose as a sole carbon source [H]
COG id: COG1874
COG function: function code G; Beta-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 42 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013739 - InterPro: IPR013738 - InterPro: IPR013780 - InterPro: IPR003476 - InterPro: IPR013529 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02449 Glyco_hydro_42; PF08533 Glyco_hydro_42C; PF08532 Glyco_hydro_42M [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 79261; Mature: 79261
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSKLEKTHVTKAKFMLHGGDYNPDQWLDRPDILADDIKLMKLSHTNTFSVGIFAWSALE CCCCHHHHHHCEEEEEEECCCCCHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCC PEEGVYQFEWLDDIFERIHSIGGRVILATPSGARPAWLSQTYPEVLRVNASRVKQLHGGR CCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCHHHHHCCHHHHHHHHCCC HNHCLTSKVYREKTRHINRLLAERYGHHPALLMWHISNEYGGDCHCDLCQHAFREWLKSK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH YDNSLKTLNHAWWTPFWSHTFNDWSQIESPSPIGENGLHGLNLDWRRFVTDQTISFYENE HCCHHHHHHHHHCCCHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC IIPLKELTPDIPITTNFMADTPDLIPYQGLDYSKFAKHVDAISWDAYPVWHNDWESTADL CEEHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHH AMKVGFINDLYRSLKQQPFLLMECTPSAVNWHNVNKAKRPGMNLLSSMQMIAHGSDSVLY HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE FQYRKSRGSSEKLHGAVVDHDNSPKNRVFQEVAKVGETLERLSEVVGTKRPAQTAILYDW EEEECCCCCCHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC ENHWALEDAQGFAKATKRYPQTLQQHYRTFWEHDIPVDVITKEQDFSPYKLLIVPMLYLI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH SEDTVSRLKAFTADGGTLVMTYISGVVNEHDLTYTGGWHPDLQAIFGVEPLETDTLYPKD HHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCCCCCCCCCCCC RNAVSYRSQIYEMKDYATVIDVKTASVEAVYQEDFYARTPAVTSHEYQQGKAYFIGARLE CCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHCHHHCCCCCCCCHHHCCCEEEEECCHH DQFQRDFYEGLITDLSLSPVFPVRHGKGVSVQARQDQDNDYIFVMNFTEEKQLVTFDQSV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEHHHHH KDIMTGDILSGDLTMEKYEVRIVVNTH HHHHCCCCCCCCEEEEEEEEEEEEECC >Mature Secondary Structure MMSKLEKTHVTKAKFMLHGGDYNPDQWLDRPDILADDIKLMKLSHTNTFSVGIFAWSALE CCCCHHHHHHCEEEEEEECCCCCHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCC PEEGVYQFEWLDDIFERIHSIGGRVILATPSGARPAWLSQTYPEVLRVNASRVKQLHGGR CCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCHHHHHCCHHHHHHHHCCC HNHCLTSKVYREKTRHINRLLAERYGHHPALLMWHISNEYGGDCHCDLCQHAFREWLKSK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH YDNSLKTLNHAWWTPFWSHTFNDWSQIESPSPIGENGLHGLNLDWRRFVTDQTISFYENE HCCHHHHHHHHHCCCHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC IIPLKELTPDIPITTNFMADTPDLIPYQGLDYSKFAKHVDAISWDAYPVWHNDWESTADL CEEHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHH AMKVGFINDLYRSLKQQPFLLMECTPSAVNWHNVNKAKRPGMNLLSSMQMIAHGSDSVLY HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE FQYRKSRGSSEKLHGAVVDHDNSPKNRVFQEVAKVGETLERLSEVVGTKRPAQTAILYDW EEEECCCCCCHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC ENHWALEDAQGFAKATKRYPQTLQQHYRTFWEHDIPVDVITKEQDFSPYKLLIVPMLYLI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH SEDTVSRLKAFTADGGTLVMTYISGVVNEHDLTYTGGWHPDLQAIFGVEPLETDTLYPKD HHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCCCCCCCCCCCC RNAVSYRSQIYEMKDYATVIDVKTASVEAVYQEDFYARTPAVTSHEYQQGKAYFIGARLE CCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHCHHHCCCCCCCCHHHCCCEEEEECCHH DQFQRDFYEGLITDLSLSPVFPVRHGKGVSVQARQDQDNDYIFVMNFTEEKQLVTFDQSV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEHHHHH KDIMTGDILSGDLTMEKYEVRIVVNTH HHHHCCCCCCCCEEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]