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The map label for this gene is yvbX

Identifier: 16080455

GI number: 16080455

Start: 3491655

End: 3492689

Strand: Reverse

Name: yvbX

Synonym: BSU34020

Alternate gene names: 16080455

Gene position: 3492689-3491655 (Counterclockwise)

Preceding gene: 16080456

Following gene: 16080454

Centisome position: 82.85

GC content: 40.97

Gene sequence:

>1035_bases
ATGAAAAAATGGCTGATCATAGCGGTTTCACTGGCGATTGCGATTGTTCTGTTTATGTATACAAAAGGAGAAGCGAAGGC
AGCCGGTATGACAGTAGGCTACACGACTGGGGATACGGCTTCATACAATTCTCTTACGAAATATCATACATACATGAATG
CCATCGCAACCGATACATTTGCGTTTGAAAAAAACGGACAAATCATTGGCGATGCCCCAACTAAGCAGCTGACATATGCG
AAAAAGAAAAAAATCAAGACATGGGCTGTCATTTCAAACTATAATGATGCCATTTATGATTTTGACGGAGATTTAGCGAG
TCGGGTCATGAGCAATAAAACAGCGAAAAAACGATTCACAGATCAGTTAATTACACTGGCCAAAAAGCACTCATATTACG
GAATCAATATCGATTTTGAAGCAGTAAATCCAGAAGACCGCGCTGCATACTCGAACTTCATTCAATATGTCTCACAGGCT
TTGAATAAGAAACATATTAAAACAATGGTATCCGTTCCGGCCAAAAGCGCCGATGATAAAAATGATGACTGGAGCTGGCC
GTATGATTATGCGAAAATCGGCAAATATGCCGACTTCGTACAAGTCATGACCTACGATGAACACGGCATTTGGGGTGAGC
CGGGGTCAGTGGCAAGCACAAACTGGATCAAAAGCTCTCTGCAGTTTTCAGTCAAAAAGATCAAAGCCAATAAAGTCATC
ATGGGAATCCCTGCGTACGGCTATGACTGGGATGTAAAAGACGGAAGTACCAGCACAATAAGGGAATGGAATGAGCTCAA
ATCCCTCATCAAAAAACAAAAAGCAAAGCCGGCATTCAACAAAAAATCAGGCTCGATGACGTTTTCTTATGTTGACAAAA
AGAAGCATAAACATGTCGTGTGGTATGAAAACGAAAAAACCGTTCAAACGAAAAGCCATCTGGCAAAGCAATATAAAATA
GCAGGTGTTTCAGTTTACGCATTAGGAAACGAGTCAGAATCCTTTTGGAAAGCCATTCGAAAAGGGACAAAATAA

Upstream 100 bases:

>100_bases
AAGCCCGGCAGGCATATGCCGGGCTTTTTGCTTGAAAAAACTTCAACTTCCAATTTTTTGGCCGATGAGAAGAGTATGAC
TTGATACAGGAGGAAATGCG

Downstream 100 bases:

>100_bases
CAGTTTCTTTTTTCTCTGAAGTTATTGACAGTTAAAAGAGAAGCACGTATATTATGTTAATATATTCAGATCATAAAATT
TGAGTTTTTCAGAAAACTAA

Product: epimerase modification of peptidoglycan

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKKWLIIAVSLAIAIVLFMYTKGEAKAAGMTVGYTTGDTASYNSLTKYHTYMNAIATDTFAFEKNGQIIGDAPTKQLTYA
KKKKIKTWAVISNYNDAIYDFDGDLASRVMSNKTAKKRFTDQLITLAKKHSYYGINIDFEAVNPEDRAAYSNFIQYVSQA
LNKKHIKTMVSVPAKSADDKNDDWSWPYDYAKIGKYADFVQVMTYDEHGIWGEPGSVASTNWIKSSLQFSVKKIKANKVI
MGIPAYGYDWDVKDGSTSTIREWNELKSLIKKQKAKPAFNKKSGSMTFSYVDKKKHKHVVWYENEKTVQTKSHLAKQYKI
AGVSVYALGNESESFWKAIRKGTK

Sequences:

>Translated_344_residues
MKKWLIIAVSLAIAIVLFMYTKGEAKAAGMTVGYTTGDTASYNSLTKYHTYMNAIATDTFAFEKNGQIIGDAPTKQLTYA
KKKKIKTWAVISNYNDAIYDFDGDLASRVMSNKTAKKRFTDQLITLAKKHSYYGINIDFEAVNPEDRAAYSNFIQYVSQA
LNKKHIKTMVSVPAKSADDKNDDWSWPYDYAKIGKYADFVQVMTYDEHGIWGEPGSVASTNWIKSSLQFSVKKIKANKVI
MGIPAYGYDWDVKDGSTSTIREWNELKSLIKKQKAKPAFNKKSGSMTFSYVDKKKHKHVVWYENEKTVQTKSHLAKQYKI
AGVSVYALGNESESFWKAIRKGTK
>Mature_344_residues
MKKWLIIAVSLAIAIVLFMYTKGEAKAAGMTVGYTTGDTASYNSLTKYHTYMNAIATDTFAFEKNGQIIGDAPTKQLTYA
KKKKIKTWAVISNYNDAIYDFDGDLASRVMSNKTAKKRFTDQLITLAKKHSYYGINIDFEAVNPEDRAAYSNFIQYVSQA
LNKKHIKTMVSVPAKSADDKNDDWSWPYDYAKIGKYADFVQVMTYDEHGIWGEPGSVASTNWIKSSLQFSVKKIKANKVI
MGIPAYGYDWDVKDGSTSTIREWNELKSLIKKQKAKPAFNKKSGSMTFSYVDKKKHKHVVWYENEKTVQTKSHLAKQYKI
AGVSVYALGNESESFWKAIRKGTK

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 18 family

Homologues:

Organism=Homo sapiens, GI218083215, Length=234, Percent_Identity=18.3760683760684, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI218083182, Length=234, Percent_Identity=18.3760683760684, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI218083142, Length=234, Percent_Identity=18.3760683760684, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI218083233, Length=234, Percent_Identity=18.3760683760684, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI25150970, Length=246, Percent_Identity=23.1707317073171, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI116007452, Length=291, Percent_Identity=22.3367697594502, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVBX_BACSU (O32258)

Other databases:

- EMBL:   AL009126
- PIR:   H70030
- RefSeq:   NP_391282.1
- ProteinModelPortal:   O32258
- EnsemblBacteria:   EBBACT00000000316
- GeneID:   937709
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34020
- NMPDR:   fig|224308.1.peg.3408
- GenoList:   BSU34020
- GeneTree:   EBGT00050000000551
- HOGENOM:   HBG057362
- OMA:   TSTIREW
- ProtClustDB:   CLSK2752515
- BioCyc:   BSUB:BSU34020-MONOMER
- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- Gene3D:   G3DSA:3.20.20.80
- SMART:   SM00636

Pfam domain/function: PF00704 Glyco_hydro_18; SSF51445 Glyco_hydro_cat

EC number: NA

Molecular weight: Translated: 38951; Mature: 38951

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS01095 CHITINASE_18

Important sites: ACT_SITE 140-140

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLIIAVSLAIAIVLFMYTKGEAKAAGMTVGYTTGDTASYNSLTKYHTYMNAIATDTF
CCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCE
AFEKNGQIIGDAPTKQLTYAKKKKIKTWAVISNYNDAIYDFDGDLASRVMSNKTAKKRFT
EEECCCCEECCCCCHHHHHHHHHCCEEEEEEECCCCCEEECCHHHHHHHHHCHHHHHHHH
DQLITLAKKHSYYGINIDFEAVNPEDRAAYSNFIQYVSQALNKKHIKTMVSVPAKSADDK
HHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NDDWSWPYDYAKIGKYADFVQVMTYDEHGIWGEPGSVASTNWIKSSLQFSVKKIKANKVI
CCCCCCCCCHHHHCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCEEE
MGIPAYGYDWDVKDGSTSTIREWNELKSLIKKQKAKPAFNKKSGSMTFSYVDKKKHKHVV
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEE
WYENEKTVQTKSHLAKQYKIAGVSVYALGNESESFWKAIRKGTK
EECCCCCHHHHHHHHHHHEECCEEEEEECCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKKWLIIAVSLAIAIVLFMYTKGEAKAAGMTVGYTTGDTASYNSLTKYHTYMNAIATDTF
CCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCE
AFEKNGQIIGDAPTKQLTYAKKKKIKTWAVISNYNDAIYDFDGDLASRVMSNKTAKKRFT
EEECCCCEECCCCCHHHHHHHHHCCEEEEEEECCCCCEEECCHHHHHHHHHCHHHHHHHH
DQLITLAKKHSYYGINIDFEAVNPEDRAAYSNFIQYVSQALNKKHIKTMVSVPAKSADDK
HHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NDDWSWPYDYAKIGKYADFVQVMTYDEHGIWGEPGSVASTNWIKSSLQFSVKKIKANKVI
CCCCCCCCCHHHHCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCEEE
MGIPAYGYDWDVKDGSTSTIREWNELKSLIKKQKAKPAFNKKSGSMTFSYVDKKKHKHVV
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEE
WYENEKTVQTKSHLAKQYKIAGVSVYALGNESESFWKAIRKGTK
EECCCCCHHHHHHHHHHHEECCEEEEEECCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377