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The map label for this gene is yvbY

Identifier: 16080456

GI number: 16080456

Start: 3492797

End: 3493519

Strand: Reverse

Name: yvbY

Synonym: BSU34030

Alternate gene names: 16080456

Gene position: 3493519-3492797 (Counterclockwise)

Preceding gene: 16080457

Following gene: 16080455

Centisome position: 82.87

GC content: 49.38

Gene sequence:

>723_bases
ATGACGAAGGGAACCATTCAGAATCAAGAGAGCTTTTTAAACCGAATCGCATCCAGCCTGGGCCGTGAACGAAGAACAGG
AGGCGTGGCAGTCCCTGAATGGGCGCATCAGCCGCAATATAAAACACTTGAAGGTTATTCAGCGGATGACTTAGTCACAG
TGCTCAAAAACCATTGTGTCAAAATCCATACAGAGCTGATTGAAACGGATTCAACCGGCCTTTACGATGCCCTGCGCGAG
CAAGTCAGCCGCTTTTCTGGAGGCCCTGTCATCATTCCGAAGGACCCCCGCTTTGAAGAATACGGACTGAAAAGCCTGCT
CACCAAGGACTGGCCGAGTGAAGGAACGCCGGTCTGGGAGTGGGATGCTGACAAAGGCGAGGAAAATATTAAAAAAGCGG
AGCAAGCCAATGTAGGGATTACATTCAGCGAAATTACATTGGCTGAGTCGGGGACGGTTGTCCTCTTCTCCTCAAAAGAC
ATCGGCCGCTCTGTCAGCCTTTTGCCAACGACTTATATTGCGATCGTGCCGAAATCAAGCATTGTACCGAGAATGACACA
AGCCAGTGATATCATCCGCCAAAACATTGCGAACGGTGTCACTGTTCCTTCATGTATCAACTACATTACCGGACCGAGTA
ACTCAGCCGACATTGAAATGGATTTAGTTGTGGGGGTGCATGGACCAGTAAAGGCAGCATATATTCTCGTCTCTGACCGC
TGA

Upstream 100 bases:

>100_bases
ATTGGACCCAGATTCGCGACTTCCCGGCACCGCATAAATCGAGATTCAGAGACTGGTTTGCGGACAGAGAAACAAGTGAA
CGCACGAAGGAGGAGCAGTG

Downstream 100 bases:

>100_bases
ACTCAGGAAGCCCGGCAGGCATATGCCGGGCTTTTTGCTTGAAAAAACTTCAACTTCCAATTTTTTGGCCGATGAGAAGA
GTATGACTTGATACAGGAGG

Product: subunit of an iron-sulfur protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTKGTIQNQESFLNRIASSLGRERRTGGVAVPEWAHQPQYKTLEGYSADDLVTVLKNHCVKIHTELIETDSTGLYDALRE
QVSRFSGGPVIIPKDPRFEEYGLKSLLTKDWPSEGTPVWEWDADKGEENIKKAEQANVGITFSEITLAESGTVVLFSSKD
IGRSVSLLPTTYIAIVPKSSIVPRMTQASDIIRQNIANGVTVPSCINYITGPSNSADIEMDLVVGVHGPVKAAYILVSDR

Sequences:

>Translated_240_residues
MTKGTIQNQESFLNRIASSLGRERRTGGVAVPEWAHQPQYKTLEGYSADDLVTVLKNHCVKIHTELIETDSTGLYDALRE
QVSRFSGGPVIIPKDPRFEEYGLKSLLTKDWPSEGTPVWEWDADKGEENIKKAEQANVGITFSEITLAESGTVVLFSSKD
IGRSVSLLPTTYIAIVPKSSIVPRMTQASDIIRQNIANGVTVPSCINYITGPSNSADIEMDLVVGVHGPVKAAYILVSDR
>Mature_239_residues
TKGTIQNQESFLNRIASSLGRERRTGGVAVPEWAHQPQYKTLEGYSADDLVTVLKNHCVKIHTELIETDSTGLYDALREQ
VSRFSGGPVIIPKDPRFEEYGLKSLLTKDWPSEGTPVWEWDADKGEENIKKAEQANVGITFSEITLAESGTVVLFSSKDI
GRSVSLLPTTYIAIVPKSSIVPRMTQASDIIRQNIANGVTVPSCINYITGPSNSADIEMDLVVGVHGPVKAAYILVSDR

Specific function: Is essential for L-lactate degradation and allows cells to grow with lactate as the sole carbon source. May also allow cells to utilize an alternative carbon source during biofilm formation, since it contributes to the formation of architecturally complex

COG id: COG1556

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lutC/ykgG family

Homologues:

Organism=Escherichia coli, GI87081718, Length=244, Percent_Identity=36.8852459016393, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LUTC_BACSU (O32259)

Other databases:

- EMBL:   AL009126
- PIR:   A70031
- RefSeq:   NP_391283.1
- ProteinModelPortal:   O32259
- EnsemblBacteria:   EBBACT00000001358
- GeneID:   937742
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34030
- NMPDR:   fig|224308.1.peg.3409
- GenoList:   BSU34030
- GeneTree:   EBGT00050000002605
- HOGENOM:   HBG729575
- OMA:   HTELIET
- PhylomeDB:   O32259
- ProtClustDB:   CLSK887897
- BioCyc:   BSUB:BSU34030-MONOMER
- HAMAP:   MF_02104
- InterPro:   IPR003741
- InterPro:   IPR002698
- InterPro:   IPR022823
- Gene3D:   G3DSA:3.40.50.10420

Pfam domain/function: PF02589 DUF162

EC number: NA

Molecular weight: Translated: 26277; Mature: 26146

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGTIQNQESFLNRIASSLGRERRTGGVAVPEWAHQPQYKTLEGYSADDLVTVLKNHCV
CCCCCCCCHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KIHTELIETDSTGLYDALREQVSRFSGGPVIIPKDPRFEEYGLKSLLTKDWPSEGTPVWE
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE
WDADKGEENIKKAEQANVGITFSEITLAESGTVVLFSSKDIGRSVSLLPTTYIAIVPKSS
CCCCCCHHHHHHHHHCCCCEEEHHEEEECCCEEEEEECCCCCCEEEECCEEEEEEECCCC
IVPRMTQASDIIRQNIANGVTVPSCINYITGPSNSADIEMDLVVGVHGPVKAAYILVSDR
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure 
TKGTIQNQESFLNRIASSLGRERRTGGVAVPEWAHQPQYKTLEGYSADDLVTVLKNHCV
CCCCCCCHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KIHTELIETDSTGLYDALREQVSRFSGGPVIIPKDPRFEEYGLKSLLTKDWPSEGTPVWE
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE
WDADKGEENIKKAEQANVGITFSEITLAESGTVVLFSSKDIGRSVSLLPTTYIAIVPKSS
CCCCCCHHHHHHHHHCCCCEEEHHEEEECCCEEEEEECCCCCCEEEECCEEEEEEECCCC
IVPRMTQASDIIRQNIANGVTVPSCINYITGPSNSADIEMDLVVGVHGPVKAAYILVSDR
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377