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The map label for this gene is sdpR

Identifier: 16080432

GI number: 16080432

Start: 3467054

End: 3467326

Strand: Reverse

Name: sdpR

Synonym: BSU33790

Alternate gene names: 16080432

Gene position: 3467326-3467054 (Counterclockwise)

Preceding gene: 16080433

Following gene: 16080431

Centisome position: 82.25

GC content: 32.97

Gene sequence:

>273_bases
ATGAATAATGTTTTCAAAGCTATATCAGATCCAACAAGGAGAAAAATTTTGGATTTGTTAAAAGGAGGGGATATGACTGC
GGGAGATATTGCTGAGCATTTTAATATCAGCAAACCGAGTATTTCGCACCACTTGAATATTTTAAAGCAAGCGGAAGTCA
TAAGTGACCATCGCAAAGGACAATTTATTTATTACTCTCTAAATACAACAGTACTTCAAGACTCAATAAATTGGATGCTT
AACTTTATAAATAAAGGGGATAACGATTTATGA

Upstream 100 bases:

>100_bases
TTTGAGGGTTGTTTTTAAAAAAATTCAAGTTATAATGAAAATAATACATTTATACAAATATCTAAATGTCTAAATGTTTT
TTTGTAAAGGAGAAAACGCT

Downstream 100 bases:

>100_bases
AGAAAAATATAATTTCCATAATTATTGTATGTTTGAGTTTCTTGACTTCAATTATATTATATCAATACCTTCCAGAAGAA
ATACCGATACAATGGTCAGG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKGQFIYYSLNTTVLQDSINWML
NFINKGDNDL

Sequences:

>Translated_90_residues
MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKGQFIYYSLNTTVLQDSINWML
NFINKGDNDL
>Mature_90_residues
MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKGQFIYYSLNTTVLQDSINWML
NFINKGDNDL

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SDPR_BACSU (O32242)

Other databases:

- EMBL:   AL009126
- PIR:   D70029
- RefSeq:   NP_391259.1
- ProteinModelPortal:   O32242
- SMR:   O32242
- EnsemblBacteria:   EBBACT00000000791
- GeneID:   936249
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33790
- NMPDR:   fig|224308.1.peg.3385
- GenoList:   BSU33790
- GeneTree:   EBGT00050000000704
- HOGENOM:   HBG742701
- OMA:   ERDMTAG
- BioCyc:   BSUB:BSU33790-MONOMER
- GO:   GO:0005737
- InterPro:   IPR001845
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00778
- SMART:   SM00418

Pfam domain/function: PF01022 HTH_5

EC number: NA

Molecular weight: Translated: 10243; Mature: 10243

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS00846 HTH_ARSR_1; PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKG
CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
QFIYYSLNTTVLQDSINWMLNFINKGDNDL
CEEEEECCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKG
CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
QFIYYSLNTTVLQDSINWMLNFINKGDNDL
CEEEEECCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377