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The map label for this gene is opuCD

Identifier: 16080433

GI number: 16080433

Start: 3467546

End: 3468235

Strand: Reverse

Name: opuCD

Synonym: BSU33800

Alternate gene names: 16080433

Gene position: 3468235-3467546 (Counterclockwise)

Preceding gene: 16080434

Following gene: 16080432

Centisome position: 82.27

GC content: 48.7

Gene sequence:

>690_bases
ATGGAAGTACTACAGCAGCTTGGCACATACTATTCGCAAAACGGCGGTTACGTGCTGCAGGAATTTTACCGCCATTTTCT
GATGTCGGTGTATGGCGTTTTATTTGCCGCCATTGTTGGAATTCCGCTCGGCATCCTGATAGCCAGATACAGAAGATTAA
GCGGATGGGTTTTTGCGGTCACGAATGTCATTCAGACCATCCCGGCTCTCGCCATGCTCGCCGTGCTGATGCTTGTCATG
GGGCTGGGCGCTAATACGGTGATATTGTCATTATTTCTGTATTCTCTTCTGCCGATTATCAGAAATACGTATACAGGGAT
TATCAGTATTGAGCACGCCTATCTTGAATCGGGAAAAGCAATGGGGATGACAAAATTTCAAGTGCTGCGGATGGTCGAGC
TTCCGCTTGCGCTTTCTGTCATAATGGCCGGCCTGCGCACCGCGCTTGTCATTGCGATCGGCATTACGGCCATCGGGACA
TTTGTCGGTGCTGGCGGTCTCGGGGACATCATCGTCAGAGGATCAAACGCCACAAACGGAACCGCGATTATATTAGCGGG
AGCGATCCCCACAGCTCTGATGGCGGTGATTGCCGATTTGGTCATGGGCTGGCTTGAACGAGCATTAAGCCCGATTAAAA
AGAAAAAAGGAAATTTTATTATAGCTGATAGAAAAACCACCTCTATTTAA

Upstream 100 bases:

>100_bases
TTAATTATGAGGTGGATGGCAAGCTGAAGGAGCCGTCTGTCGTAGCAAAGGAATTTTTAGAGAAACATCATTATTTTGAC
TAAGAAAAGAGGTGGATCAT

Downstream 100 bases:

>100_bases
ATACAACAGAGGTGGTTTTTTTAAATAAACAACATGTGTTAGTATCTGTTAAACATATTTTCCAGCGTTGGGATTATCCG
AGTATTTGAAAAAATACAAA

Product: glycine betaine/carnitine/choline/choline sulfate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MEVLQQLGTYYSQNGGYVLQEFYRHFLMSVYGVLFAAIVGIPLGILIARYRRLSGWVFAVTNVIQTIPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDIIVRGSNATNGTAIILAGAIPTALMAVIADLVMGWLERALSPIKKKKGNFIIADRKTTSI

Sequences:

>Translated_229_residues
MEVLQQLGTYYSQNGGYVLQEFYRHFLMSVYGVLFAAIVGIPLGILIARYRRLSGWVFAVTNVIQTIPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDIIVRGSNATNGTAIILAGAIPTALMAVIADLVMGWLERALSPIKKKKGNFIIADRKTTSI
>Mature_229_residues
MEVLQQLGTYYSQNGGYVLQEFYRHFLMSVYGVLFAAIVGIPLGILIARYRRLSGWVFAVTNVIQTIPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDIIVRGSNATNGTAIILAGAIPTALMAVIADLVMGWLERALSPIKKKKGNFIIADRKTTSI

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1788449, Length=191, Percent_Identity=40.3141361256544, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1788451, Length=194, Percent_Identity=33.5051546391753, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1789033, Length=185, Percent_Identity=30.2702702702703, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1786564, Length=215, Percent_Identity=27.4418604651163, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OPUCD_BACSU (O34742)

Other databases:

- EMBL:   AF009352
- EMBL:   AL009126
- PIR:   F69670
- RefSeq:   NP_391260.1
- ProteinModelPortal:   O34742
- SMR:   O34742
- EnsemblBacteria:   EBBACT00000001397
- GeneID:   937199
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33800
- NMPDR:   fig|224308.1.peg.3386
- GenoList:   BSU33800
- GeneTree:   EBGT00070000031878
- HOGENOM:   HBG592565
- OMA:   IMAGLRN
- PhylomeDB:   O34742
- ProtClustDB:   CLSK885986
- BioCyc:   BSUB:BSU33800-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 24551; Mature: 24551

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x125b7628)-; HASH(0x11c5cfcc)-; HASH(0x12027d7c)-; HASH(0x121ffad8)-; HASH(0x1206e61c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVLQQLGTYYSQNGGYVLQEFYRHFLMSVYGVLFAAIVGIPLGILIARYRRLSGWVFAV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNVIQTIPALAMLAVLMLVMGLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCC
MGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDIIVRGSNATNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
TAIILAGAIPTALMAVIADLVMGWLERALSPIKKKKGNFIIADRKTTSI
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
>Mature Secondary Structure
MEVLQQLGTYYSQNGGYVLQEFYRHFLMSVYGVLFAAIVGIPLGILIARYRRLSGWVFAV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNVIQTIPALAMLAVLMLVMGLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCC
MGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDIIVRGSNATNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
TAIILAGAIPTALMAVIADLVMGWLERALSPIKKKKGNFIIADRKTTSI
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377