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The map label for this gene is yulE

Identifier: 16080170

GI number: 16080170

Start: 3197933

End: 3199207

Strand: Reverse

Name: yulE

Synonym: BSU31180

Alternate gene names: 16080170

Gene position: 3199207-3197933 (Counterclockwise)

Preceding gene: 16080171

Following gene: 16080168

Centisome position: 75.89

GC content: 45.33

Gene sequence:

>1275_bases
ATGACCATAAAAGCCAATTATGACAGTGCAAAACAGGCATATGAAAAATGGGGAATTGATGTTGAAGAGGCGCTTCGGCA
ATTAGAGCAAGTGCCCATTTCGATCCACTGCTGGCAGGGTGACGACATTGAAGGCTTTGAAGTAAATAAGGGCGAGCTTT
CAGGCGGAATTGACGTGACCGGCAATTATCCCGGAAAAGCGCAAACTCCTGAAGAATTAAGAAGAGATTTGGAGAAGGCT
CTTTCTCTCATTCCTGGAAAGCACCGCGTAAACCTGCATGCGATATACGCAGAAACAAACAGGGAAGCGGTAGAACGTGA
CGAATTGAAGCCGCAGCATTTTGAAAACTGGGTGAAATGGGCAAAAAACCTTGGTCTCGGTTTAGATTTTAATCCAACCT
TGTTTTCGCATGAGAAAGCGGCTGACGGACTCACCCTTTCACACCCTGATCCGGACATCAGAGAATTTTGGATCAGGCAT
TGCATCGCTTGCCGCCGTATCGGGGAATACTTCGGGAAAGAATTAGGAACACCTTGCTTGACGAATATTTGGATTCCCGA
CGGCTATAAGGATATCCCGAGTGATAGGCTGACACCGCGTAAAAGACTAAAAGAATCACTGGATCGGATCTTCTCAGAGG
AGATCAGTGAACAACATAATCTTGATTCAATCGAGAGCAAGCTGTTCGGGCTTGGCTCCGAATCATATGTTGTCGGATCT
CATGAATTTTATTTAGCTTATGCTTTGACGAATCATAAGCTTTGTTTACTTGATACAGGCCATTTCCATCCGACTGAGAC
GGTATCAAACAAGATCTCGTCCATGCTGCTTTACACAGACAAGCTTGCCTTGCACGTATCGCGGCCTGTTCGTTGGGATA
GCGACCATGTAGTGGTTTTGGATGATGAATTGAGAGAAATCGCTCTTGAAATTGTACGAAATCATGCTCTTGAGAAGGTA
GCCATCGGTCTGGATTTTTTCGATGCCAGCATTAACCGTGTAGCCGCCTGGACCATCGGAACGAGAAATATGATCAAAGC
TTTATTGTATGCCCTGCTTCTCCCGAACGGATATTTAAAACAATTGCAGGAAGAGGGCCGCTATACAGAAAGGCTGGCCC
TGATGGAGGAATTCAAAACATATCCTTTCGGAGCCATCTGGGATTCCTACTGTGAGCAAATGGGCGTTCCGGTAAAAGAG
GCATGGCTTTATGACATCAAAGAATATGAGCAACAGGTGCTTTTAAAAAGGAAGGCATCTTCTCCGATTGTCTAA

Upstream 100 bases:

>100_bases
GCGCCATTAATGAAAACAAATTCGGATTTCAGTCCTGTTGCGATAGATCTAAAGGAAGTTTTTTATTTGGATTGAAAAAC
TGATAAAGGGAGAGAGCCGT

Downstream 100 bases:

>100_bases
TAAAAAATCCGCCGCGGCATTTGCACGCGGGCGGATTTTTTTAAGCTTGATCAGCAGGGTATACAATCCCCATTTGCTTT
CTTGCTTCTTCCATAATTTT

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTIKANYDSAKQAYEKWGIDVEEALRQLEQVPISIHCWQGDDIEGFEVNKGELSGGIDVTGNYPGKAQTPEELRRDLEKA
LSLIPGKHRVNLHAIYAETNREAVERDELKPQHFENWVKWAKNLGLGLDFNPTLFSHEKAADGLTLSHPDPDIREFWIRH
CIACRRIGEYFGKELGTPCLTNIWIPDGYKDIPSDRLTPRKRLKESLDRIFSEEISEQHNLDSIESKLFGLGSESYVVGS
HEFYLAYALTNHKLCLLDTGHFHPTETVSNKISSMLLYTDKLALHVSRPVRWDSDHVVVLDDELREIALEIVRNHALEKV
AIGLDFFDASINRVAAWTIGTRNMIKALLYALLLPNGYLKQLQEEGRYTERLALMEEFKTYPFGAIWDSYCEQMGVPVKE
AWLYDIKEYEQQVLLKRKASSPIV

Sequences:

>Translated_424_residues
MTIKANYDSAKQAYEKWGIDVEEALRQLEQVPISIHCWQGDDIEGFEVNKGELSGGIDVTGNYPGKAQTPEELRRDLEKA
LSLIPGKHRVNLHAIYAETNREAVERDELKPQHFENWVKWAKNLGLGLDFNPTLFSHEKAADGLTLSHPDPDIREFWIRH
CIACRRIGEYFGKELGTPCLTNIWIPDGYKDIPSDRLTPRKRLKESLDRIFSEEISEQHNLDSIESKLFGLGSESYVVGS
HEFYLAYALTNHKLCLLDTGHFHPTETVSNKISSMLLYTDKLALHVSRPVRWDSDHVVVLDDELREIALEIVRNHALEKV
AIGLDFFDASINRVAAWTIGTRNMIKALLYALLLPNGYLKQLQEEGRYTERLALMEEFKTYPFGAIWDSYCEQMGVPVKE
AWLYDIKEYEQQVLLKRKASSPIV
>Mature_423_residues
TIKANYDSAKQAYEKWGIDVEEALRQLEQVPISIHCWQGDDIEGFEVNKGELSGGIDVTGNYPGKAQTPEELRRDLEKAL
SLIPGKHRVNLHAIYAETNREAVERDELKPQHFENWVKWAKNLGLGLDFNPTLFSHEKAADGLTLSHPDPDIREFWIRHC
IACRRIGEYFGKELGTPCLTNIWIPDGYKDIPSDRLTPRKRLKESLDRIFSEEISEQHNLDSIESKLFGLGSESYVVGSH
EFYLAYALTNHKLCLLDTGHFHPTETVSNKISSMLLYTDKLALHVSRPVRWDSDHVVVLDDELREIALEIVRNHALEKVA
IGLDFFDASINRVAAWTIGTRNMIKALLYALLLPNGYLKQLQEEGRYTERLALMEEFKTYPFGAIWDSYCEQMGVPVKEA
WLYDIKEYEQQVLLKRKASSPIV

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family

Homologues:

Organism=Escherichia coli, GI48994990, Length=415, Percent_Identity=58.3132530120482, Blast_Score=526, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAA_BACSU (O05264)

Other databases:

- EMBL:   Z93938
- EMBL:   AL009126
- PIR:   G70014
- RefSeq:   NP_390996.1
- ProteinModelPortal:   O05264
- SMR:   O05264
- EnsemblBacteria:   EBBACT00000001898
- GeneID:   938836
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31180
- NMPDR:   fig|224308.1.peg.3121
- GenoList:   BSU31180
- GeneTree:   EBGT00050000001376
- HOGENOM:   HBG313138
- OMA:   VNLHAIY
- PhylomeDB:   O05264
- ProtClustDB:   PRK01076
- BioCyc:   BSUB:BSU31180-MONOMER
- BRENDA:   5.3.1.14
- GO:   GO:0005737
- HAMAP:   MF_00541
- InterPro:   IPR009308
- InterPro:   IPR013022
- Gene3D:   G3DSA:3.20.20.150
- TIGRFAMs:   TIGR01748

Pfam domain/function: PF06134 RhaA; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: =5.3.1.14

Molecular weight: Translated: 48646; Mature: 48515

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKANYDSAKQAYEKWGIDVEEALRQLEQVPISIHCWQGDDIEGFEVNKGELSGGIDVT
CEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCEEEC
GNYPGKAQTPEELRRDLEKALSLIPGKHRVNLHAIYAETNREAVERDELKPQHFENWVKW
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCHHHHHHHHHH
AKNLGLGLDFNPTLFSHEKAADGLTLSHPDPDIREFWIRHCIACRRIGEYFGKELGTPCL
HHHCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
TNIWIPDGYKDIPSDRLTPRKRLKESLDRIFSEEISEQHNLDSIESKLFGLGSESYVVGS
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEECC
HEFYLAYALTNHKLCLLDTGHFHPTETVSNKISSMLLYTDKLALHVSRPVRWDSDHVVVL
CEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCEEEE
DDELREIALEIVRNHALEKVAIGLDFFDASINRVAAWTIGTRNMIKALLYALLLPNGYLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCHHHH
QLQEEGRYTERLALMEEFKTYPFGAIWDSYCEQMGVPVKEAWLYDIKEYEQQVLLKRKAS
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
SPIV
CCCC
>Mature Secondary Structure 
TIKANYDSAKQAYEKWGIDVEEALRQLEQVPISIHCWQGDDIEGFEVNKGELSGGIDVT
EEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCEEEC
GNYPGKAQTPEELRRDLEKALSLIPGKHRVNLHAIYAETNREAVERDELKPQHFENWVKW
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCHHHHHHHHHH
AKNLGLGLDFNPTLFSHEKAADGLTLSHPDPDIREFWIRHCIACRRIGEYFGKELGTPCL
HHHCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
TNIWIPDGYKDIPSDRLTPRKRLKESLDRIFSEEISEQHNLDSIESKLFGLGSESYVVGS
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEECC
HEFYLAYALTNHKLCLLDTGHFHPTETVSNKISSMLLYTDKLALHVSRPVRWDSDHVVVL
CEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCEEEE
DDELREIALEIVRNHALEKVAIGLDFFDASINRVAAWTIGTRNMIKALLYALLLPNGYLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCHHHH
QLQEEGRYTERLALMEEFKTYPFGAIWDSYCEQMGVPVKEAWLYDIKEYEQQVLLKRKAS
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
SPIV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377