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The map label for this gene is yubA

Identifier: 16080168

GI number: 16080168

Start: 3195558

End: 3196724

Strand: Reverse

Name: yubA

Synonym: BSU31160

Alternate gene names: 16080168

Gene position: 3196724-3195558 (Counterclockwise)

Preceding gene: 16080170

Following gene: 16080167

Centisome position: 75.83

GC content: 40.7

Gene sequence:

>1167_bases
GTGGAGACGTTGCAAACATGGAGCGGCAGATTCAAGCGATTCTTCTTGGATAATAAGTTTGTTTTATTTTTGCTTGTGCT
GCTGCTGATTGGTTTAAATATTCTAGTATTTACAAAAACATCATTTATTTTCACCCCGATTATTGTTCTGCTCAAAACGA
TATCACTTCCGATTATTTTGACAGGCATTGTTTTTTATCTGTTAAACCCAGTCGTCGATTTTCTGGAGAGAAGAAGAATA
AGAAGAATCTATTCTATATTGCTGCTATACCTATTGGTTATCGGGCTGATCACGATCACGATCGTGTCGATCATTCCCTT
CTTAAAAGAACAAATTATGAGTTTGATTGACAATATCCCGAGATATGTGGACGTCGTAGAAAATCAGACGAAACAGCTGA
TTGGCAGCAACTTCGTCAATCAGGCCCAGCAAACGATGAACATTAATATATCTGATCTTGCTACAAAGGTTTCGGATCAG
GCAGCGACGATCGTGAACAGCACCTTTACCGGTGTTGGGAATTTTATCGGCGCACTGACTGAGATTATCATTTCGATCGT
CACGGTTCCGTTTATTCTATTTTATTTGCTAAAAGACGGAAGAAAATTACCGGTCTACATACTGAAGTTTGTGCCGACTC
GATTGAAAGAACAGACATATACAGTCTTAAGCGAAATGAATCATCGGTTAAGCTCTTATATCAGAGGCCAGATCATTGTC
AGCTTCTGTATCGGGTTTTTGCTGTTTATCGGTTATTTGATTATCGGGCTGGATTATGCTTCATTGCTTGCAGTCATTGC
GGCTTGCACAAGCATCGTTCCATATTTAGGGCCAACGATTGCCATTACGCCTGCGATTATCATTGCCATAGTGACATCGC
CGCTCATGCTGCTTAAGCTGGTGATCGTTTGGACGATTGTTCAGCTGATTGAAGGGAAGCTGATCTCTCCGCAAATTATG
GGAAAAAACCTTCACATCCATCCGATTACGATTATTTTTCTGCTGTTAACAGCCGGCAAGCTGTTTGGCGTTGTTGGAAT
CATTCTTGCGATTCCCGGCTATGCGGTTGCCAAAGTCATTACGACACATTTATTTGACTGGTTTAAAATGCAGTCACATT
TATACGATGAAGAAAAAAATGAAAATACGCCGGGGCATAAAGTGTGA

Upstream 100 bases:

>100_bases
AAAACCGAGAAAGCTTTTCCAGCAATTAACGGTTTTTATTTTTCATTATAGGGACGATAGTGTACAATTTAATTAAACTA
TGTATGACGGAGGAACGATA

Downstream 100 bases:

>100_bases
TTTTCGTTTATAGTTATATAAGACGGGCTTTCCATTTATGGGAAGCTCCCGTTATGTAAAAAAATAAATGTCTAATGGGG
AGAATCAAAATCATGACTCT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
METLQTWSGRFKRFFLDNKFVLFLLVLLLIGLNILVFTKTSFIFTPIIVLLKTISLPIILTGIVFYLLNPVVDFLERRRI
RRIYSILLLYLLVIGLITITIVSIIPFLKEQIMSLIDNIPRYVDVVENQTKQLIGSNFVNQAQQTMNINISDLATKVSDQ
AATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHRLSSYIRGQIIV
SFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIM
GKNLHIHPITIIFLLLTAGKLFGVVGIILAIPGYAVAKVITTHLFDWFKMQSHLYDEEKNENTPGHKV

Sequences:

>Translated_388_residues
METLQTWSGRFKRFFLDNKFVLFLLVLLLIGLNILVFTKTSFIFTPIIVLLKTISLPIILTGIVFYLLNPVVDFLERRRI
RRIYSILLLYLLVIGLITITIVSIIPFLKEQIMSLIDNIPRYVDVVENQTKQLIGSNFVNQAQQTMNINISDLATKVSDQ
AATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHRLSSYIRGQIIV
SFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIM
GKNLHIHPITIIFLLLTAGKLFGVVGIILAIPGYAVAKVITTHLFDWFKMQSHLYDEEKNENTPGHKV
>Mature_388_residues
METLQTWSGRFKRFFLDNKFVLFLLVLLLIGLNILVFTKTSFIFTPIIVLLKTISLPIILTGIVFYLLNPVVDFLERRRI
RRIYSILLLYLLVIGLITITIVSIIPFLKEQIMSLIDNIPRYVDVVENQTKQLIGSNFVNQAQQTMNINISDLATKVSDQ
AATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHRLSSYIRGQIIV
SFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIM
GKNLHIHPITIIFLLLTAGKLFGVVGIILAIPGYAVAKVITTHLFDWFKMQSHLYDEEKNENTPGHKV

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family

Homologues:

Organism=Escherichia coli, GI1788838, Length=356, Percent_Identity=24.1573033707865, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082271, Length=334, Percent_Identity=24.251497005988, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUBA_BACSU (O32086)

Other databases:

- EMBL:   AL009126
- PIR:   D70006
- RefSeq:   NP_390994.1
- EnsemblBacteria:   EBBACT00000000240
- GeneID:   938833
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31160
- NMPDR:   fig|224308.1.peg.3119
- GenoList:   BSU31160
- GeneTree:   EBGT00070000031825
- HOGENOM:   HBG712680
- OMA:   HIHPITI
- ProtClustDB:   CLSK887783
- BioCyc:   BSUB:BSU31160-MONOMER
- InterPro:   IPR002549
- PANTHER:   PTHR21716

Pfam domain/function: PF01594 UPF0118

EC number: NA

Molecular weight: Translated: 43611; Mature: 43611

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11ca81e8)-; HASH(0xf023cb4)-; HASH(0xf017c44)-; HASH(0x11c1e418)-; HASH(0xd422e1c)-; HASH(0x112f8178)-; HASH(0x119df288)-; HASH(0x11563004)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLQTWSGRFKRFFLDNKFVLFLLVLLLIGLNILVFTKTSFIFTPIIVLLKTISLPIIL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGIVFYLLNPVVDFLERRRIRRIYSILLLYLLVIGLITITIVSIIPFLKEQIMSLIDNIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYVDVVENQTKQLIGSNFVNQAQQTMNINISDLATKVSDQAATIVNSTFTGVGNFIGALT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHRLSSYIRGQIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIAIVTSPLMLLKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIILAIPGYAVAKVI
HHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TTHLFDWFKMQSHLYDEEKNENTPGHKV
HHHHHHHHHHHHHHCCCCCCCCCCCCCH
>Mature Secondary Structure
METLQTWSGRFKRFFLDNKFVLFLLVLLLIGLNILVFTKTSFIFTPIIVLLKTISLPIIL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGIVFYLLNPVVDFLERRRIRRIYSILLLYLLVIGLITITIVSIIPFLKEQIMSLIDNIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYVDVVENQTKQLIGSNFVNQAQQTMNINISDLATKVSDQAATIVNSTFTGVGNFIGALT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHRLSSYIRGQIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIAIVTSPLMLLKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIILAIPGYAVAKVI
HHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TTHLFDWFKMQSHLYDEEKNENTPGHKV
HHHHHHHHHHHHHHCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377