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The map label for this gene is ytrC

Identifier: 16080096

GI number: 16080096

Start: 3116996

End: 3117982

Strand: Reverse

Name: ytrC

Synonym: BSU30440

Alternate gene names: 16080096

Gene position: 3117982-3116996 (Counterclockwise)

Preceding gene: 16080097

Following gene: 16080095

Centisome position: 73.96

GC content: 40.02

Gene sequence:

>987_bases
ATGGTAGACCGAGGTCTCCTCTATCGAGAGTGGAAGCAGAATCAAGTGGTGATTTTGTTAAGTATCGCGTTTTTAGTATT
GGCAAATCCGCTTTCTATCGTTAATACGTATTTGTCTTATCAAGGGTGTCTTGATCGCCAAGACCCGCAATATTGTGATT
TTATTGTGAATTATTCCATAAGCAATCTGATAGATATCAACTGGGTGCCGGGTGTCATTTTGGCGGTCTGCTTCCTCGGA
ATGGAGCGTTCGAAAGGCACGATGGATTTTATATTAAGCCTCCCGTATAACAGAAGCCAAATTTTTCAGACAAAATTTTG
GTTAGGCGGTTTTGTGATTGTGCTGTCACAATTGATTGGCTTTTTACTTGCATGGCTGCTGATTCTTGTCTATAACCCTG
AACACGTCTACTTTTTTGAGCACAGCAGCATTGGAGTAATCGTGATAAGTTTTATGGCTTTTTCACTGGTGATGGCCGCC
GGAGCGTTAACTGGAAATGCTTTTGCCCAACTGTTAACGGCGTTTTCAGCAGCTATATTGCCGTATTTAATTATTGCATT
GCCGGTTGGAAACCTAGAAGTTGTTTTTGGTGCGAATATATGGGAAATATTCCCTTCCCCTGAGAGTTATTTCTCTCTGG
CAAGCAATTTATCGAACCTAGTACCGATTAGTTACGTTGTAAATGAATGGCTGATTAACAGTAAATATCTTTTATTGATT
CCAGCCGTAATGAGCATGCTATTTTACTTGATTGGCTTTATAAGCTTCAAGAAGCTTCCAAGTGAACGGAACGGACACTT
TTTCTTATGGAACAGATTAGATCGCCCGGTGCAAATTCTGGTTATGGCTTTCGGCATCCTTGGATTTGGTTTATTTGGAT
ACTATACCGGACATTCCATTATTGGTTATATTTTGGGTATGATCATTGGAGCAGTGGCTGGATTCTTTGTGAGCTACTTC
TCTATTTATAAGAAAACAAAAGTGTAA

Upstream 100 bases:

>100_bases
AGAAAAAGAGCTTTTTGAGAGAGCTGAAGCCAAAAGTGTGGAATGAGCTTCCTGTCAACCTGGAAGAAGTGTTCATTGCG
AAGTTTGGAGGGAAGCGGAG

Downstream 100 bases:

>100_bases
GAAATGCCTTAGGTTTGGAGGGAAGTGAGTTGCCGGATTCCGGACTGCTTTACAAAGAGTGGCGGCAGAATAAAGTCGCC
TTAGTTATCACCATTTTGGT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVDRGLLYREWKQNQVVILLSIAFLVLANPLSIVNTYLSYQGCLDRQDPQYCDFIVNYSISNLIDINWVPGVILAVCFLG
MERSKGTMDFILSLPYNRSQIFQTKFWLGGFVIVLSQLIGFLLAWLLILVYNPEHVYFFEHSSIGVIVISFMAFSLVMAA
GALTGNAFAQLLTAFSAAILPYLIIALPVGNLEVVFGANIWEIFPSPESYFSLASNLSNLVPISYVVNEWLINSKYLLLI
PAVMSMLFYLIGFISFKKLPSERNGHFFLWNRLDRPVQILVMAFGILGFGLFGYYTGHSIIGYILGMIIGAVAGFFVSYF
SIYKKTKV

Sequences:

>Translated_328_residues
MVDRGLLYREWKQNQVVILLSIAFLVLANPLSIVNTYLSYQGCLDRQDPQYCDFIVNYSISNLIDINWVPGVILAVCFLG
MERSKGTMDFILSLPYNRSQIFQTKFWLGGFVIVLSQLIGFLLAWLLILVYNPEHVYFFEHSSIGVIVISFMAFSLVMAA
GALTGNAFAQLLTAFSAAILPYLIIALPVGNLEVVFGANIWEIFPSPESYFSLASNLSNLVPISYVVNEWLINSKYLLLI
PAVMSMLFYLIGFISFKKLPSERNGHFFLWNRLDRPVQILVMAFGILGFGLFGYYTGHSIIGYILGMIIGAVAGFFVSYF
SIYKKTKV
>Mature_328_residues
MVDRGLLYREWKQNQVVILLSIAFLVLANPLSIVNTYLSYQGCLDRQDPQYCDFIVNYSISNLIDINWVPGVILAVCFLG
MERSKGTMDFILSLPYNRSQIFQTKFWLGGFVIVLSQLIGFLLAWLLILVYNPEHVYFFEHSSIGVIVISFMAFSLVMAA
GALTGNAFAQLLTAFSAAILPYLIIALPVGNLEVVFGANIWEIFPSPESYFSLASNLSNLVPISYVVNEWLINSKYLLLI
PAVMSMLFYLIGFISFKKLPSERNGHFFLWNRLDRPVQILVMAFGILGFGLFGYYTGHSIIGYILGMIIGAVAGFFVSYF
SIYKKTKV

Specific function: Part of the ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-5 integral membrane protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTRC_BACSU (O34898)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   A70000
- RefSeq:   NP_390922.1
- ProteinModelPortal:   O34898
- EnsemblBacteria:   EBBACT00000000052
- GeneID:   937243
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30440
- NMPDR:   fig|224308.1.peg.3047
- GenoList:   BSU30440
- GeneTree:   EBGT00050000000866
- HOGENOM:   HBG338246
- OMA:   TYILIFL
- ProtClustDB:   CLSK887755
- BioCyc:   BSUB:BSU30440-MONOMER
- GO:   GO:0006810

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36951; Mature: 36951

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11d3dff0)-; HASH(0x117028cc)-; HASH(0xe8e497c)-; HASH(0x117824ac)-; HASH(0x11836d14)-; HASH(0x11c94b24)-; HASH(0x11b172a4)-; HASH(0x11d7c050)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDRGLLYREWKQNQVVILLSIAFLVLANPLSIVNTYLSYQGCLDRQDPQYCDFIVNYSI
CCCCCCHHHHCCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCH
SNLIDINWVPGVILAVCFLGMERSKGTMDFILSLPYNRSQIFQTKFWLGGFVIVLSQLIG
HHEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
FLLAWLLILVYNPEHVYFFEHSSIGVIVISFMAFSLVMAAGALTGNAFAQLLTAFSAAIL
HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
PYLIIALPVGNLEVVFGANIWEIFPSPESYFSLASNLSNLVPISYVVNEWLINSKYLLLI
HHHHHHCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHH
PAVMSMLFYLIGFISFKKLPSERNGHFFLWNRLDRPVQILVMAFGILGFGLFGYYTGHSI
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IGYILGMIIGAVAGFFVSYFSIYKKTKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MVDRGLLYREWKQNQVVILLSIAFLVLANPLSIVNTYLSYQGCLDRQDPQYCDFIVNYSI
CCCCCCHHHHCCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCH
SNLIDINWVPGVILAVCFLGMERSKGTMDFILSLPYNRSQIFQTKFWLGGFVIVLSQLIG
HHEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
FLLAWLLILVYNPEHVYFFEHSSIGVIVISFMAFSLVMAAGALTGNAFAQLLTAFSAAIL
HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
PYLIIALPVGNLEVVFGANIWEIFPSPESYFSLASNLSNLVPISYVVNEWLINSKYLLLI
HHHHHHCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHH
PAVMSMLFYLIGFISFKKLPSERNGHFFLWNRLDRPVQILVMAFGILGFGLFGYYTGHSI
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IGYILGMIIGAVAGFFVSYFSIYKKTKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377