BacMap

Definition	Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome.
Accession	NC_000964
Length	4,215,606

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The map label for this gene is ytrB

Identifier: 16080097

GI number: 16080097

Start: 3117976

End: 3118854

Strand: Reverse

Name: ytrB

Synonym: BSU30450

Alternate gene names: 16080097

Gene position: 3118854-3117976 (Counterclockwise)

Preceding gene: 16080098

Following gene: 16080096

Centisome position: 73.98

GC content: 44.14

Gene sequence:

>879_bases
ATGATTGAACTGCGGCAGCTGTCAAAAGCGATTGACGGCAATCAAGTATTAAAAGATGTTTCATTAACAATCGAAAAAGG
AGAAATCTTTGGATTGCTTGGACGCAATGGATCGGGCAAAACGACGATGCTTCGCTTAATCCAGCAAATCATTTTCGCTG
ACAGCGGAACGATTTTATTTGACGGCGTAGAAATCAAAAAGCACCCGAAAGTCAAACAAAATATCATCTACATGCCTGTT
CAAAATCCGTTTTACGATAAGTATACATACAAGCAGTTAGTCGATATTTTGAGAAGAATATATCCGAAATTTGATGTCAC
GTACGCGAATGAGCTGATGAACAGATACGAAATTCCGGAAACGAAAAAATACCGTGAGCTGTCGACAGGCTTAAAAAAGC
AGCTATCGCTCGTTCTGTCGTTTGCGGCGAGACCGGCGCTGATCCTCCTTGATGAGCCGACGGATGGTATTGATGCGGTG
ACAAGGCATGATGTGCTGCAGCTGATGGTCGATGAAGTGGCAGAGCGTGATACGAGCATCCTGATTACGTCCCACCGGCT
TGAAGACATAGAGCGGATGTGCAACCGAATTGGTTTTCTTGAAGATAACAGCCTGACCAACGTCATGGATCTTGATGAGT
TAAAAGAAGAATACATTAAAATTCAAATGGCCTTCGATACAGATGTCAATTTGGCCATCAGAGAGCAAAACATTCCGATG
CTCGATCAGGCCGGCGTGTTTTACACAGTGCTGATTCCGAAAAGCGATGAGGAGAAAAAGAGCTTTTTGAGAGAGCTGAA
GCCAAAAGTGTGGAATGAGCTTCCTGTCAACCTGGAAGAAGTGTTCATTGCGAAGTTTGGAGGGAAGCGGAGATGGTAG

Upstream 100 bases:

>100_bases
AAACAGCTCATCATCGATGCACACTATGCAGGGGTTGAGCTGGAAAAACTGCACGAATGGATAAAGGAAATCAGCGCTGA
TGTGAAGGGAGGCAAAAAAA

Downstream 100 bases:

>100_bases
ACCGAGGTCTCCTCTATCGAGAGTGGAAGCAGAATCAAGTGGTGATTTTGTTAAGTATCGCGTTTTTAGTATTGGCAAAT
CCGCTTTCTATCGTTAATAC

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILFDGVEIKKHPKVKQNIIYMPV
QNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIPETKKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAV
TRHDVLQLMVDEVAERDTSILITSHRLEDIERMCNRIGFLEDNSLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPM
LDQAGVFYTVLIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW

Sequences:

>Translated_292_residues
MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILFDGVEIKKHPKVKQNIIYMPV
QNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIPETKKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAV
TRHDVLQLMVDEVAERDTSILITSHRLEDIERMCNRIGFLEDNSLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPM
LDQAGVFYTVLIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW
>Mature_292_residues
MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILFDGVEIKKHPKVKQNIIYMPV
QNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIPETKKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAV
TRHDVLQLMVDEVAERDTSILITSHRLEDIERMCNRIGFLEDNSLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPM
LDQAGVFYTVLIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain

Homologues:

Organism=Homo sapiens, GI153792144, Length=243, Percent_Identity=25.9259259259259, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI31657092, Length=217, Percent_Identity=29.9539170506912, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI116734710, Length=208, Percent_Identity=32.2115384615385, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=27.1428571428571, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI30795238, Length=210, Percent_Identity=27.1428571428571, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI45446740, Length=229, Percent_Identity=27.0742358078603, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI47078218, Length=229, Percent_Identity=27.0742358078603, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI27436953, Length=209, Percent_Identity=26.7942583732057, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI6005701, Length=208, Percent_Identity=26.4423076923077, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI27477115, Length=248, Percent_Identity=23.7903225806452, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI150417984, Length=205, Percent_Identity=28.2926829268293, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=25, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=25, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI21536376, Length=205, Percent_Identity=26.3414634146341, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI105990541, Length=237, Percent_Identity=25.3164556962025, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI9961252, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4505771, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961250, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9665248, Length=222, Percent_Identity=23.4234234234234, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI148612844, Length=189, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI255708477, Length=189, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI156105685, Length=216, Percent_Identity=25.462962962963, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=30.3846153846154, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=29.0322580645161, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081782, Length=251, Percent_Identity=28.6852589641434, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=28.3783783783784, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=29.2035398230088, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786319, Length=211, Percent_Identity=28.436018957346, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789891, Length=238, Percent_Identity=24.3697478991597, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786563, Length=213, Percent_Identity=27.2300469483568, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=24.3654822335025, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787792, Length=206, Percent_Identity=27.6699029126214, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786345, Length=205, Percent_Identity=27.8048780487805, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787759, Length=220, Percent_Identity=25.9090909090909, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=25.4166666666667, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1786253, Length=188, Percent_Identity=26.063829787234, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=27.1428571428571, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=28.0952380952381, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=26.7857142857143, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788472, Length=219, Percent_Identity=26.4840182648402, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=26.3636363636364, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994883, Length=217, Percent_Identity=23.963133640553, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790190, Length=258, Percent_Identity=25.5813953488372, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790525, Length=274, Percent_Identity=23.3576642335766, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=202, Percent_Identity=25.2475247524752, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48995001, Length=241, Percent_Identity=25.3112033195021, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=29.9492385786802, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787112, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=26.0089686098655, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=220, Percent_Identity=24.5454545454545, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789962, Length=213, Percent_Identity=24.8826291079812, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=23.1441048034935, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787143, Length=219, Percent_Identity=25.1141552511416, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI145693107, Length=200, Percent_Identity=23.5, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788540, Length=194, Percent_Identity=28.3505154639175, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87082268, Length=212, Percent_Identity=23.5849056603774, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786654, Length=190, Percent_Identity=27.3684210526316, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17510237, Length=210, Percent_Identity=27.6190476190476, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71983510, Length=218, Percent_Identity=27.9816513761468, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71983516, Length=218, Percent_Identity=27.9816513761468, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71983523, Length=218, Percent_Identity=27.9816513761468, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115533608, Length=234, Percent_Identity=26.4957264957265, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=291, Percent_Identity=25.7731958762887, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17533971, Length=212, Percent_Identity=26.8867924528302, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=187, Percent_Identity=24.0641711229947, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=215, Percent_Identity=26.046511627907, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=215, Percent_Identity=27.4418604651163, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551702, Length=212, Percent_Identity=27.3584905660377, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=193, Percent_Identity=24.3523316062176, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=211, Percent_Identity=26.0663507109005, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17551700, Length=212, Percent_Identity=27.3584905660377, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=211, Percent_Identity=26.0663507109005, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=211, Percent_Identity=26.0663507109005, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=227, Percent_Identity=24.2290748898678, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=210, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=219, Percent_Identity=25.1141552511416, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322177, Length=189, Percent_Identity=25.9259259259259, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28574150, Length=242, Percent_Identity=30.5785123966942, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI116007328, Length=242, Percent_Identity=30.5785123966942, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=28.3783783783784, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24648314, Length=221, Percent_Identity=28.9592760180996, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI221500365, Length=209, Percent_Identity=26.7942583732057, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI116007184, Length=209, Percent_Identity=26.7942583732057, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI28573571, Length=234, Percent_Identity=28.6324786324786, Blast_Score=98, Evalue=8e-21,
Organism=Drosophila melanogaster, GI28573573, Length=234, Percent_Identity=28.6324786324786, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI221512771, Length=223, Percent_Identity=26.0089686098655, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=27.7511961722488, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24650855, Length=209, Percent_Identity=27.7511961722488, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281362751, Length=209, Percent_Identity=27.7511961722488, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI85725262, Length=211, Percent_Identity=29.8578199052133, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=27.0142180094787, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24582014, Length=207, Percent_Identity=26.0869565217391, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582012, Length=207, Percent_Identity=26.0869565217391, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357907, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571209, Length=212, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTRB_BACSU (O34641)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   H69999
- RefSeq:   NP_390923.1
- ProteinModelPortal:   O34641
- SMR:   O34641
- EnsemblBacteria:   EBBACT00000001550
- GeneID:   936641
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30450
- NMPDR:   fig|224308.1.peg.3048
- GenoList:   BSU30450
- GeneTree:   EBGT00070000031839
- HOGENOM:   HBG758042
- OMA:   EDIERMC
- ProtClustDB:   CLSK887756
- BioCyc:   BSUB:BSU30450-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003439
- InterPro:   IPR003593
- SMART:   SM00382

Pfam domain/function: PF00005 ABC_tran

EC number: NA

Molecular weight: Translated: 33820; Mature: 33820

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILF
CCCHHHHHHHCCHHHHHHHHHEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
DGVEIKKHPKVKQNIIYMPVQNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIPE
ECCEECCCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
TKKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAVTRHDVLQLMVDEVAERDTSI
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE
LITSHRLEDIERMCNRIGFLEDNSLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPM
EEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCC
LDQAGVFYTVLIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW
EECCCEEEEEEECCCCHHHHHHHHHHCHHHHCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILF
CCCHHHHHHHCCHHHHHHHHHEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
DGVEIKKHPKVKQNIIYMPVQNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIPE
ECCEECCCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
TKKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAVTRHDVLQLMVDEVAERDTSI
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE
LITSHRLEDIERMCNRIGFLEDNSLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPM
EEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCC
LDQAGVFYTVLIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW
EECCCEEEEEEECCCCHHHHHHHHHHCHHHHCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377