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The map label for this gene is ytrD

Identifier: 16080095

GI number: 16080095

Start: 3115989

End: 3116966

Strand: Reverse

Name: ytrD

Synonym: BSU30430

Alternate gene names: 16080095

Gene position: 3116966-3115989 (Counterclockwise)

Preceding gene: 16080096

Following gene: 16080094

Centisome position: 73.94

GC content: 40.59

Gene sequence:

>978_bases
TTGCCGGATTCCGGACTGCTTTACAAAGAGTGGCGGCAGAATAAAGTCGCCTTAGTTATCACCATTTTGGTTTTTATATT
AGGTAATCCATTATCAATTTTAAATATGTATCTCATCTATCAAGGCTGTGTCACTGGAAAAGAAAATTGGGTCGGCCCCT
GCGTATTCAGCGTTGATTATTTAAATAGCTCATTTATCTCATTGTTTTGGATTTGGGGAGTCGTTTTGGCGGTCAGCCAG
CTTGGGATTGAACGTAGCAAGAGCTTCTTTGATTTTACATTAAGCCTTCCATATACACGAGGGCAGATATTTCATGCGAA
GTTCCTTACCGGCGGAATGGTGATTGTGGTGCCGCAGCTCATAGGTTATGTTTTGTCTGTTTTGCTGATCATGCTTTTGA
AGCCAGATCAGGCCGTTTATTTTCACAATTACAGCTTGGGAATGATTATTGTTAGCATGCTGGCTTATTCTTTGGTTATG
GCCGGAGGAGCTTTGACAGGCAATAGTTTCGCACAGCTTCTAGTCTCATTTACCGTGGCCATTTCGCCGTTTTTACTCAT
CAGCCTGCCTGTGATCAACCTCGAGATCCTTTTTGGCGGATCAATAGATTTTATCCATGGTCCAGTACCTAAATGGGTGC
AGTATTTCATTCCGATAATTTATGTAGACTCGAAATGGGCTGAGAATTCACCATATTATTTAGTCATTCCGGCTATCATG
ACTATCATTTTTTACATCATCGGCTATATTAGCTTTGTTAAAATGTCTAATGAAAGAAACGGATATTTCTTCTTATGGAA
GCCGCTTAACCGCCCGGTGCAGATCATCGTTATTATCATAGGAATCATGGGCTTCGGCTATTTTGGATTTACTGCAAGCG
AGAGCTTTGCCGGTTATCTCATTGGCATGGGTACAGGTGCGGTAATCGGTTTCTTGATTAGTTATTTTGCGATTTATAAA
AAAATGAAACTTTTGTAA

Upstream 100 bases:

>100_bases
GTATGATCATTGGAGCAGTGGCTGGATTCTTTGTGAGCTACTTCTCTATTTATAAGAAAACAAAAGTGTAAGAAATGCCT
TAGGTTTGGAGGGAAGTGAG

Downstream 100 bases:

>100_bases
GGGAGAGAGAACATATGATTGATGTTCAGCATATCGACCATTCTTTCACGATCGGAAAAAAGGGCCGTGAGAATGAAGTT
CCAGTATTGAAGGATGTTTC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MPDSGLLYKEWRQNKVALVITILVFILGNPLSILNMYLIYQGCVTGKENWVGPCVFSVDYLNSSFISLFWIWGVVLAVSQ
LGIERSKSFFDFTLSLPYTRGQIFHAKFLTGGMVIVVPQLIGYVLSVLLIMLLKPDQAVYFHNYSLGMIIVSMLAYSLVM
AGGALTGNSFAQLLVSFTVAISPFLLISLPVINLEILFGGSIDFIHGPVPKWVQYFIPIIYVDSKWAENSPYYLVIPAIM
TIIFYIIGYISFVKMSNERNGYFFLWKPLNRPVQIIVIIIGIMGFGYFGFTASESFAGYLIGMGTGAVIGFLISYFAIYK
KMKLL

Sequences:

>Translated_325_residues
MPDSGLLYKEWRQNKVALVITILVFILGNPLSILNMYLIYQGCVTGKENWVGPCVFSVDYLNSSFISLFWIWGVVLAVSQ
LGIERSKSFFDFTLSLPYTRGQIFHAKFLTGGMVIVVPQLIGYVLSVLLIMLLKPDQAVYFHNYSLGMIIVSMLAYSLVM
AGGALTGNSFAQLLVSFTVAISPFLLISLPVINLEILFGGSIDFIHGPVPKWVQYFIPIIYVDSKWAENSPYYLVIPAIM
TIIFYIIGYISFVKMSNERNGYFFLWKPLNRPVQIIVIIIGIMGFGYFGFTASESFAGYLIGMGTGAVIGFLISYFAIYK
KMKLL
>Mature_324_residues
PDSGLLYKEWRQNKVALVITILVFILGNPLSILNMYLIYQGCVTGKENWVGPCVFSVDYLNSSFISLFWIWGVVLAVSQL
GIERSKSFFDFTLSLPYTRGQIFHAKFLTGGMVIVVPQLIGYVLSVLLIMLLKPDQAVYFHNYSLGMIIVSMLAYSLVMA
GGALTGNSFAQLLVSFTVAISPFLLISLPVINLEILFGGSIDFIHGPVPKWVQYFIPIIYVDSKWAENSPYYLVIPAIMT
IIFYIIGYISFVKMSNERNGYFFLWKPLNRPVQIIVIIIGIMGFGYFGFTASESFAGYLIGMGTGAVIGFLISYFAIYKK
MKLL

Specific function: Part of the ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-5 integral membrane protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTRD_BACSU (O34953)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   B70000
- RefSeq:   NP_390921.1
- ProteinModelPortal:   O34953
- EnsemblBacteria:   EBBACT00000003507
- GeneID:   936438
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30430
- NMPDR:   fig|224308.1.peg.3046
- GenoList:   BSU30430
- GeneTree:   EBGT00050000000866
- HOGENOM:   HBG338246
- ProtClustDB:   CLSK887755
- BioCyc:   BSUB:BSU30430-MONOMER
- GO:   GO:0006810

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36435; Mature: 36304

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11ca212c)-; HASH(0x10ef4b74)-; HASH(0x111157c0)-; HASH(0x10cce500)-; HASH(0x1196ae88)-; HASH(0x11d1b2c4)-; HASH(0x11a12e58)-; HASH(0x11bdda04)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSGLLYKEWRQNKVALVITILVFILGNPLSILNMYLIYQGCVTGKENWVGPCVFSVDY
CCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHEEEEHH
LNSSFISLFWIWGVVLAVSQLGIERSKSFFDFTLSLPYTRGQIFHAKFLTGGMVIVVPQL
HHHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCEEEEHHHHCCHHHHHHHH
IGYVLSVLLIMLLKPDQAVYFHNYSLGMIIVSMLAYSLVMAGGALTGNSFAQLLVSFTVA
HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ISPFLLISLPVINLEILFGGSIDFIHGPVPKWVQYFIPIIYVDSKWAENSPYYLVIPAIM
HHHHHHHEECEEEEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCEEEEHHHHH
TIIFYIIGYISFVKMSNERNGYFFLWKPLNRPVQIIVIIIGIMGFGYFGFTASESFAGYL
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEE
IGMGTGAVIGFLISYFAIYKKMKLL
EECCHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
PDSGLLYKEWRQNKVALVITILVFILGNPLSILNMYLIYQGCVTGKENWVGPCVFSVDY
CCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHEEEEHH
LNSSFISLFWIWGVVLAVSQLGIERSKSFFDFTLSLPYTRGQIFHAKFLTGGMVIVVPQL
HHHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCEEEEHHHHCCHHHHHHHH
IGYVLSVLLIMLLKPDQAVYFHNYSLGMIIVSMLAYSLVMAGGALTGNSFAQLLVSFTVA
HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ISPFLLISLPVINLEILFGGSIDFIHGPVPKWVQYFIPIIYVDSKWAENSPYYLVIPAIM
HHHHHHHEECEEEEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCEEEEHHHHH
TIIFYIIGYISFVKMSNERNGYFFLWKPLNRPVQIIVIIIGIMGFGYFGFTASESFAGYL
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEE
IGMGTGAVIGFLISYFAIYKKMKLL
EECCHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377