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The map label for this gene is yrpC

Identifier: 16079734

GI number: 16079734

Start: 2738308

End: 2739105

Strand: Direct

Name: yrpC

Synonym: BSU26810

Alternate gene names: 16079734

Gene position: 2738308-2739105 (Clockwise)

Preceding gene: 16079733

Following gene: 16079735

Centisome position: 64.96

GC content: 34.71

Gene sequence:

>798_bases
ATGAAAATAGGATTTTTTGATTCAGGAATTGGTGGCATGACTGTATTGTATGAGGCCATAAAAGTTCTTCCTTATGAAGA
TTACATTTTTTATGCAGATACGTTAAACGTTCCATACGGTGAAAAATCAAAGGGTAAAGTTAAAGAATATATTTTCAATG
CAGCTGAATTTCTGGCCAGTCAAAATATCAAAGCTCTTGTTATTGCGTGTAATACAGCTACTAGCATTGCGATAGAGGAT
CTTCGGAGAAACTTCGACTTTCCGATAATCGGAATCGAACCCGCTGTAAAGCCTGCTATAAATAAATGTACAGAGGAAAG
AAAAAGAGTTCTGGTAGTTGCTACTAATTTGACGCTTAAAGAAGAGAAATTTCATAATCTAGTTAAAGAAATTGATCACC
ATGACCTTGTTGATTGCTTAGCTCTTCCAGGACTAGTTGAATTTGCTGAGAACTTTGATTTTAGTGAAGACAAAATCATT
AAATATCTAAAGAACGAACTATCTTCTTTTGATCTGAAACAATATGGAACGATTGTGTTAGGATGCACTCATTTTCCGTT
TTTCAAAAACAGTTTTGAAAAACTGTTTGGGATAAAAGTTGATATGATTTCAGGCAGTGTCGGTACTGCAAAACAGTTGA
AAAAAGTTCTTGCAGATCGTAACCAGCTTGGTAAAGGATCGGGCTCAATCACCTTTTTCAATTCTGGCCATAAAATTGTG
GACCAAGAAGTCATATCAAAGTACAAAAGATTGTTTGAAATATTAGATGAAACTCAAAGGAGTCATGTTGGACATTGA

Upstream 100 bases:

>100_bases
CCATATTAAATTTGAATAGTAAAATGGTTCTTTTTCGTTTGATTCAGATGATATAAAGTCATATGATAAAAAAAGAATGA
GACAGAAAGCGTGAGAAGTG

Downstream 100 bases:

>100_bases
ATGTAAATGAAAAAGACAATCTCCTGAAGAGAAACATGAACTAAGAAGCGGGCTTAAAAAGCCCACTTTTTTTCTAACAA
ACAATTGAGTTATACACACA

Product: glutamate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKIGFFDSGIGGMTVLYEAIKVLPYEDYIFYADTLNVPYGEKSKGKVKEYIFNAAEFLASQNIKALVIACNTATSIAIED
LRRNFDFPIIGIEPAVKPAINKCTEERKRVLVVATNLTLKEEKFHNLVKEIDHHDLVDCLALPGLVEFAENFDFSEDKII
KYLKNELSSFDLKQYGTIVLGCTHFPFFKNSFEKLFGIKVDMISGSVGTAKQLKKVLADRNQLGKGSGSITFFNSGHKIV
DQEVISKYKRLFEILDETQRSHVGH

Sequences:

>Translated_265_residues
MKIGFFDSGIGGMTVLYEAIKVLPYEDYIFYADTLNVPYGEKSKGKVKEYIFNAAEFLASQNIKALVIACNTATSIAIED
LRRNFDFPIIGIEPAVKPAINKCTEERKRVLVVATNLTLKEEKFHNLVKEIDHHDLVDCLALPGLVEFAENFDFSEDKII
KYLKNELSSFDLKQYGTIVLGCTHFPFFKNSFEKLFGIKVDMISGSVGTAKQLKKVLADRNQLGKGSGSITFFNSGHKIV
DQEVISKYKRLFEILDETQRSHVGH
>Mature_265_residues
MKIGFFDSGIGGMTVLYEAIKVLPYEDYIFYADTLNVPYGEKSKGKVKEYIFNAAEFLASQNIKALVIACNTATSIAIED
LRRNFDFPIIGIEPAVKPAINKCTEERKRVLVVATNLTLKEEKFHNLVKEIDHHDLVDCLALPGLVEFAENFDFSEDKII
KYLKNELSSFDLKQYGTIVLGCTHFPFFKNSFEKLFGIKVDMISGSVGTAKQLKKVLADRNQLGKGSGSITFFNSGHKIV
DQEVISKYKRLFEILDETQRSHVGH

Specific function: Provides the (R)-glutamate required for cell wall biosynthesis

COG id: COG0796

COG function: function code M; Glutamate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family

Homologues:

Organism=Escherichia coli, GI87082355, Length=184, Percent_Identity=36.4130434782609, Blast_Score=107, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MURI2_BACSU (O05412)

Other databases:

- EMBL:   U93875
- EMBL:   AL009126
- PIR:   C69978
- RefSeq:   NP_390558.1
- ProteinModelPortal:   O05412
- SMR:   O05412
- EnsemblBacteria:   EBBACT00000001322
- GeneID:   937619
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26810
- NMPDR:   fig|224308.1.peg.2683
- GenoList:   BSU26810
- GeneTree:   EBGT00050000002346
- HOGENOM:   HBG645102
- OMA:   GCTHYLH
- PhylomeDB:   O05412
- ProtClustDB:   CLSK806693
- BioCyc:   BSUB:BSU26810-MONOMER
- BRENDA:   5.1.1.3
- HAMAP:   MF_00258
- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004391
- Gene3D:   G3DSA:3.40.50.1860
- TIGRFAMs:   TIGR00067

Pfam domain/function: PF01177 Asp_Glu_race; SSF53681 Asp/Glu_race

EC number: =5.1.1.3

Molecular weight: Translated: 29877; Mature: 29877

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00923 ASP_GLU_RACEMASE_1; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGFFDSGIGGMTVLYEAIKVLPYEDYIFYADTLNVPYGEKSKGKVKEYIFNAAEFLAS
CEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
QNIKALVIACNTATSIAIEDLRRNFDFPIIGIEPAVKPAINKCTEERKRVLVVATNLTLK
CCCEEEEEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCEEEEEEECCEEC
EEKFHNLVKEIDHHDLVDCLALPGLVEFAENFDFSEDKIIKYLKNELSSFDLKQYGTIVL
HHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCEEEE
GCTHFPFFKNSFEKLFGIKVDMISGSVGTAKQLKKVLADRNQLGKGSGSITFFNSGHKIV
ECCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHH
DQEVISKYKRLFEILDETQRSHVGH
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIGFFDSGIGGMTVLYEAIKVLPYEDYIFYADTLNVPYGEKSKGKVKEYIFNAAEFLAS
CEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
QNIKALVIACNTATSIAIEDLRRNFDFPIIGIEPAVKPAINKCTEERKRVLVVATNLTLK
CCCEEEEEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCEEEEEEECCEEC
EEKFHNLVKEIDHHDLVDCLALPGLVEFAENFDFSEDKIIKYLKNELSSFDLKQYGTIVL
HHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCEEEE
GCTHFPFFKNSFEKLFGIKVDMISGSVGTAKQLKKVLADRNQLGKGSGSITFFNSGHKIV
ECCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHH
DQEVISKYKRLFEILDETQRSHVGH
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 10380621