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The map label for this gene is yrpD

Identifier: 16079735

GI number: 16079735

Start: 2739486

End: 2740193

Strand: Direct

Name: yrpD

Synonym: BSU26820

Alternate gene names: 16079735

Gene position: 2739486-2740193 (Clockwise)

Preceding gene: 16079734

Following gene: 255767617

Centisome position: 64.98

GC content: 44.63

Gene sequence:

>708_bases
ATGATGAAAAAAGGTCTGCTTGCGGGTGCGCTTACGGCAACCGTGCTTTTTGGCACATGTGCAGTAGATGTACCGGGTAT
TATTAGTCCAAAAACCGCAGAAGCTGCATCACAGCTAACTGATGGAATCGGCGGGAGGGCTTACTTGAACAGTAATGGTG
CCATTCTTGTTACGAAAATCCAGCTTCCTAGCTCCACTCAGGTTTCAAATGGGACAGCCTACATCTACTCTGGTTTTAGC
GGAGGCACAGAATCCGATATCGGGTTTCAGTACAGTGATAAATATAATGTATGGAAACCATATATGAAAGTCGGTTCAAA
AGGACAGGATCAGGTTCAGTACCTCGAAGGAGGAAGCCAATTCACGAATACGAAAGGCTTCCGTCCCGGCAGCACCGTAC
AACTTACCATCTACAAAAACCTTAACGGCAATACCCGCGCTACATACTGGGGCACGAACAATGCCGGATACAACGGCCGT
CTCATTTCAGAAATCAGCAAAACAAATGTCGGCTCCATCTCAAAATGGAAAGCGCTCGCTACAGTTGCAACAACAGGGTC
ACGCCAATCTATCAAATCAAACTTTTCAACATCTTTTACAAACATCACCATCGACAACAAAGCAATAACACCTGTAATTG
ATACACAAGACTTCGCTAAAGTAACAGTCTCAGGCAACAGTGTCAGTTTATCCGTTGTCAAAAATTAA

Upstream 100 bases:

>100_bases
TTCTGTATCTATGTGCATGTTTATTATGGAATTATTTTCATAATGTTTTATAATACAAGATGATAGCGTTTTCTAATTAT
AATGATAGGGGGAAATAATG

Downstream 100 bases:

>100_bases
AACATGTTAAACATACAATGCGTTAGGCTATTGAGAAGCTCTCGATAGTCTTAAAGGGGGCTTAACATGCCCCTTTTTTC
ATTTCAATTTAACTTTCAGT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MMKKGLLAGALTATVLFGTCAVDVPGIISPKTAEAASQLTDGIGGRAYLNSNGAILVTKIQLPSSTQVSNGTAYIYSGFS
GGTESDIGFQYSDKYNVWKPYMKVGSKGQDQVQYLEGGSQFTNTKGFRPGSTVQLTIYKNLNGNTRATYWGTNNAGYNGR
LISEISKTNVGSISKWKALATVATTGSRQSIKSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLSVVKN

Sequences:

>Translated_235_residues
MMKKGLLAGALTATVLFGTCAVDVPGIISPKTAEAASQLTDGIGGRAYLNSNGAILVTKIQLPSSTQVSNGTAYIYSGFS
GGTESDIGFQYSDKYNVWKPYMKVGSKGQDQVQYLEGGSQFTNTKGFRPGSTVQLTIYKNLNGNTRATYWGTNNAGYNGR
LISEISKTNVGSISKWKALATVATTGSRQSIKSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLSVVKN
>Mature_235_residues
MMKKGLLAGALTATVLFGTCAVDVPGIISPKTAEAASQLTDGIGGRAYLNSNGAILVTKIQLPSSTQVSNGTAYIYSGFS
GGTESDIGFQYSDKYNVWKPYMKVGSKGQDQVQYLEGGSQFTNTKGFRPGSTVQLTIYKNLNGNTRATYWGTNNAGYNGR
LISEISKTNVGSISKWKALATVATTGSRQSIKSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLSVVKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yncM

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRPD_BACSU (O05411)

Other databases:

- EMBL:   U93875
- EMBL:   AL009126
- PIR:   D69978
- RefSeq:   NP_390559.1
- ProteinModelPortal:   O05411
- EnsemblBacteria:   EBBACT00000002046
- GeneID:   937397
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26820
- NMPDR:   fig|224308.1.peg.2684
- GenoList:   BSU26820
- GeneTree:   EBGT00050000002248
- HOGENOM:   HBG338686
- OMA:   NGTAYIY
- ProtClustDB:   CLSK887344
- BioCyc:   BSUB:BSU26820-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24876; Mature: 24876

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKGLLAGALTATVLFGTCAVDVPGIISPKTAEAASQLTDGIGGRAYLNSNGAILVTKI
CCCCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEE
QLPSSTQVSNGTAYIYSGFSGGTESDIGFQYSDKYNVWKPYMKVGSKGQDQVQYLEGGSQ
ECCCCCEECCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCHHHHHHCCCCC
FTNTKGFRPGSTVQLTIYKNLNGNTRATYWGTNNAGYNGRLISEISKTNVGSISKWKALA
CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEHHHHCCCCCCHHHHEEE
TVATTGSRQSIKSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLSVVKN
EEECCCCHHHHHHCCCCCEEEEEECCCEECEEECCCCCEEEEEECCEEEEEEEEC
>Mature Secondary Structure
MMKKGLLAGALTATVLFGTCAVDVPGIISPKTAEAASQLTDGIGGRAYLNSNGAILVTKI
CCCCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEE
QLPSSTQVSNGTAYIYSGFSGGTESDIGFQYSDKYNVWKPYMKVGSKGQDQVQYLEGGSQ
ECCCCCEECCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCHHHHHHCCCCC
FTNTKGFRPGSTVQLTIYKNLNGNTRATYWGTNNAGYNGRLISEISKTNVGSISKWKALA
CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEHHHHCCCCCCHHHHEEE
TVATTGSRQSIKSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLSVVKN
EEECCCCHHHHHHCCCCCEEEEEECCCEECEEECCCCCEEEEEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377