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The map label for this gene is yrdB

Identifier: 16079730

GI number: 16079730

Start: 2733772

End: 2734143

Strand: Reverse

Name: yrdB

Synonym: BSU26770

Alternate gene names: 16079730

Gene position: 2734143-2733772 (Counterclockwise)

Preceding gene: 16079731

Following gene: 16079729

Centisome position: 64.86

GC content: 33.6

Gene sequence:

>372_bases
TTGGAAAAACTGAATCAGACTAATTTACTTTTAAGATTCACCCTTGAAATTGCTGCACTAATCTCCTTAGGGGTGTATGC
TTGGATAAGCTTTAATGGTTATTTTAAATATGTTTTAACTTTGGTTTTACCTATTGCAGTTATGATTGTCTGGTCTGTAT
TTGCAGTACCTCATGATCCTAGTCGAAGCGGACAAACTGTAATAGCTGTAAACGGAGTAACAAGGTTAGTTATTGAATTA
TTGATCTTTGCAATGGCTGTTGCAGCGCTTTATTTTAGTTATTTAAAACCAGTTAGTATTGTCTTTTTATGTCTTATAAT
ACTCCACTACATCATTTCAGCTGAGCGTATCAAATGGCTTCTAAATCAATAG

Upstream 100 bases:

>100_bases
AACTACAATAGAATCTAAAGAGGAAGAACAGAAAAGTTTTTATACGCTGAAATAAAGCAGAGAAAGAGCATCTCCTGCGG
GGGTGTTTTTTATAGAGGAG

Downstream 100 bases:

>100_bases
TTTTTCATTTCAGCACTCGTTATTAGAGTGTTTTTTATTATTCTCTGTAGAGCCAGTGATTCTCAGATTAGATTTGAAGG
TTAACGGCTTGGGCACAGTT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MEKLNQTNLLLRFTLEIAALISLGVYAWISFNGYFKYVLTLVLPIAVMIVWSVFAVPHDPSRSGQTVIAVNGVTRLVIEL
LIFAMAVAALYFSYLKPVSIVFLCLIILHYIISAERIKWLLNQ

Sequences:

>Translated_123_residues
MEKLNQTNLLLRFTLEIAALISLGVYAWISFNGYFKYVLTLVLPIAVMIVWSVFAVPHDPSRSGQTVIAVNGVTRLVIEL
LIFAMAVAALYFSYLKPVSIVFLCLIILHYIISAERIKWLLNQ
>Mature_123_residues
MEKLNQTNLLLRFTLEIAALISLGVYAWISFNGYFKYVLTLVLPIAVMIVWSVFAVPHDPSRSGQTVIAVNGVTRLVIEL
LIFAMAVAALYFSYLKPVSIVFLCLIILHYIISAERIKWLLNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To E.coli yhgE

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRDB_BACSU (O07080)

Other databases:

- EMBL:   U93876
- EMBL:   AL009126
- PIR:   H69972
- RefSeq:   NP_390554.1
- ProteinModelPortal:   O07080
- EnsemblBacteria:   EBBACT00000003199
- GeneID:   936140
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26770
- NMPDR:   fig|224308.1.peg.2679
- GenoList:   BSU26770
- OMA:   SAERIKW
- ProtClustDB:   CLSK217201
- BioCyc:   BSUB:BSU26770-MONOMER
- InterPro:   IPR021214

Pfam domain/function: PF10823 DUF2568

EC number: NA

Molecular weight: Translated: 13917; Mature: 13917

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1134a9e0)-; HASH(0x110b9d74)-; HASH(0x1039f6d8)-; HASH(0x10940310)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLNQTNLLLRFTLEIAALISLGVYAWISFNGYFKYVLTLVLPIAVMIVWSVFAVPHDP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SRSGQTVIAVNGVTRLVIELLIFAMAVAALYFSYLKPVSIVFLCLIILHYIISAERIKWL
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNQ
HCH
>Mature Secondary Structure
MEKLNQTNLLLRFTLEIAALISLGVYAWISFNGYFKYVLTLVLPIAVMIVWSVFAVPHDP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SRSGQTVIAVNGVTRLVIELLIFAMAVAALYFSYLKPVSIVFLCLIILHYIISAERIKWL
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNQ
HCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377