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The map label for this gene is yrdA

Identifier: 16079731

GI number: 16079731

Start: 2734953

End: 2735456

Strand: Reverse

Name: yrdA

Synonym: BSU26780

Alternate gene names: 16079731

Gene position: 2735456-2734953 (Counterclockwise)

Preceding gene: 16079732

Following gene: 16079730

Centisome position: 64.89

GC content: 39.09

Gene sequence:

>504_bases
GTGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAGTTCGAAGCAGATGCTACACAGAAACTATTAAATAGTCTGAC
TGATGAATCACTTAAACAAGAAATAACTTCACAAAATTGGACTCTAGGCCGTATTGCTTGGCATACTGTTGCTGCCATTG
GCATCATTACCTCAAACACAGACTTAACGTTCCAAGCCCCAGCTGAAGATTATCCTGTTCCAACTTCTGCTCAGTTTATA
GCTGACAGCTATCATCAAGCCAGTAATGCATTTGTACAGGCATTAAAAACCCAATGGACTGACCATACACTTCAAGAACG
TATCAACTTTATTGGACAACAAATGCCTAACGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCACCATCGGGGAC
AAATGACTGTTCTTATGAGACAAGCAGGTTTAACTGTTCCAGGTATTTATGGTCCAGCAAAAGAAGAATGGGCAAAATTT
GGTTTGGAAGCCCCGAAAATGTAA

Upstream 100 bases:

>100_bases
TTATTCTTGTCCGAAATTTTTGTTCTTTTTAACGAAAGGAGGCATTATAATTAACCTATAAGCACATTGAAAAAACAAAA
GAATGAAAAGGAGGATTTTT

Downstream 100 bases:

>100_bases
TTAACCTTTTTATAAAAAGTTACGCTATGACAACATATAAGAAGATGTTTTGATCAATCTTTTTTCAAAACATGTTCTTT
TTTTGTTCGTTTACAATGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MFQTLDHFLKSWEFEADATQKLLNSLTDESLKQEITSQNWTLGRIAWHTVAAIGIITSNTDLTFQAPAEDYPVPTSAQFI
ADSYHQASNAFVQALKTQWTDHTLQERINFIGQQMPNGSLLMFLIQHQNHHRGQMTVLMRQAGLTVPGIYGPAKEEWAKF
GLEAPKM

Sequences:

>Translated_167_residues
MFQTLDHFLKSWEFEADATQKLLNSLTDESLKQEITSQNWTLGRIAWHTVAAIGIITSNTDLTFQAPAEDYPVPTSAQFI
ADSYHQASNAFVQALKTQWTDHTLQERINFIGQQMPNGSLLMFLIQHQNHHRGQMTVLMRQAGLTVPGIYGPAKEEWAKF
GLEAPKM
>Mature_167_residues
MFQTLDHFLKSWEFEADATQKLLNSLTDESLKQEITSQNWTLGRIAWHTVAAIGIITSNTDLTFQAPAEDYPVPTSAQFI
ADSYHQASNAFVQALKTQWTDHTLQERINFIGQQMPNGSLLMFLIQHQNHHRGQMTVLMRQAGLTVPGIYGPAKEEWAKF
GLEAPKM

Specific function: Unknown

COG id: COG2318

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dinB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRDA_BACSU (O07079)

Other databases:

- EMBL:   U93876
- EMBL:   AL009126
- PIR:   G69972
- RefSeq:   NP_390555.1
- ProteinModelPortal:   O07079
- SMR:   O07079
- EnsemblBacteria:   EBBACT00000001815
- GeneID:   937620
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26780
- NMPDR:   fig|224308.1.peg.2680
- GenoList:   BSU26780
- GeneTree:   EBGT00050000003041
- HOGENOM:   HBG338193
- OMA:   QTIEGFL
- ProtClustDB:   CLSK873164
- BioCyc:   BSUB:BSU26780-MONOMER
- InterPro:   IPR007837

Pfam domain/function: PF05163 DinB

EC number: NA

Molecular weight: Translated: 18918; Mature: 18918

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQTLDHFLKSWEFEADATQKLLNSLTDESLKQEITSQNWTLGRIAWHTVAAIGIITSNT
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCC
DLTFQAPAEDYPVPTSAQFIADSYHQASNAFVQALKTQWTDHTLQERINFIGQQMPNGSL
CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCE
LMFLIQHQNHHRGQMTVLMRQAGLTVPGIYGPAKEEWAKFGLEAPKM
EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MFQTLDHFLKSWEFEADATQKLLNSLTDESLKQEITSQNWTLGRIAWHTVAAIGIITSNT
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCC
DLTFQAPAEDYPVPTSAQFIADSYHQASNAFVQALKTQWTDHTLQERINFIGQQMPNGSL
CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCE
LMFLIQHQNHHRGQMTVLMRQAGLTVPGIYGPAKEEWAKFGLEAPKM
EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377