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The map label for this gene is yrdC

Identifier: 16079729

GI number: 16079729

Start: 2732980

End: 2733543

Strand: Reverse

Name: yrdC

Synonym: BSU26760

Alternate gene names: 16079729

Gene position: 2733543-2732980 (Counterclockwise)

Preceding gene: 16079730

Following gene: 16079727

Centisome position: 64.84

GC content: 34.04

Gene sequence:

>564_bases
GTGGAAGAAAAGAAAGCTTTAATCATTGTGGATGTACAAAAAGCCTTCGATGATAAAAAATGGGGGGAACGGAATAACGT
AAAGGCGGAAGAAAACATTAGTAAAATACTAGAATTATGGAGAGAAAAAGGATGGACAGTCATATACATACAACACACTT
CTGATAAACCTCATTCTTTATTCCATCCAAAGAATGAAGGGTTTGCAATAAAGGAAATAGTTAAGCCTATGGATGAAGAA
GTCATTATAACCAAGACAGTAAATAGCAGCTTTATTGGTACGAATTTAGAAGAATTCTTAAAATTAAATGAAATAACCAC
TGTAGTCATAACTGGTTTAACCACGCCTCACTGTGTATCAACCACCACAAGAATGAGTGGTAATTTAGGGTTTGATACAT
ACCTGATTTCAGATGCAACAGCAGCCTTCGGAATGAGAGACCAAAATGATACATATTATGATGCGGCGACTATTCATAAT
ATATCTCTAGCTACATTGCATGATGAATTTGCCACAATATTGACAACTGATCAATTAATAAATGATTTTATAAAAACTCA
CTGA

Upstream 100 bases:

>100_bases
AAGGCGCTCATTTGAAATTCATCATTAAACAATTGTACAAAAGTAAAATTTGTATTTAGAATGTAGTAATAAATAGAAAT
TCTACGTAGGAGGGTATCTT

Downstream 100 bases:

>100_bases
TGAAAAACATTTTGGCACAGTAAAACGGCAGGCGCCTTTCCAATAGGAAGGGCGCTTTAATTCGATTTCCTGCTTTACTG
CTCAGAGGAGGTGCATCAAT

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MEEKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSLFHPKNEGFAIKEIVKPMDEE
VIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAATIHN
ISLATLHDEFATILTTDQLINDFIKTH

Sequences:

>Translated_187_residues
MEEKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSLFHPKNEGFAIKEIVKPMDEE
VIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAATIHN
ISLATLHDEFATILTTDQLINDFIKTH
>Mature_187_residues
MEEKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSLFHPKNEGFAIKEIVKPMDEE
VIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAATIHN
ISLATLHDEFATILTTDQLINDFIKTH

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRDC_BACSU (O07081)

Other databases:

- EMBL:   U93876
- EMBL:   AL009126
- EMBL:   Y11043
- PIR:   A69973
- PIR:   T44772
- RefSeq:   NP_390553.1
- ProteinModelPortal:   O07081
- SMR:   O07081
- EnsemblBacteria:   EBBACT00000002803
- GeneID:   937618
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26760
- GenoList:   BSU26760
- GeneTree:   EBGT00050000000751
- HOGENOM:   HBG752434
- OMA:   HNISLAT
- ProtClustDB:   CLSK2752457
- BioCyc:   BSUB:BSU26760-MONOMER
- InterPro:   IPR000868
- Gene3D:   G3DSA:3.40.50.850

Pfam domain/function: PF00857 Isochorismatase; SSF52499 Iscrsm_hydrolase

EC number: NA

Molecular weight: Translated: 21250; Mature: 21250

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSL
CCCCCEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
FHPKNEGFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVS
CCCCCCCEEHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCC
TTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAATIHNISLATLHDEFATILTTDQLI
CHHCCCCCCCCEEEEECCCHHHCCCCCCCCCEEEEEEEECEEEEEHHHHHHHHHHHHHHH
NDFIKTH
HHHHHCC
>Mature Secondary Structure
MEEKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSL
CCCCCEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
FHPKNEGFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVS
CCCCCCCEEHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCC
TTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAATIHNISLATLHDEFATILTTDQLI
CHHCCCCCCCCEEEEECCCHHHCCCCCCCCCEEEEEEEECEEEEEHHHHHHHHHHHHHHH
NDFIKTH
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000