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The map label for this gene is yqjB

Identifier: 16079450

GI number: 16079450

Start: 2488953

End: 2489483

Strand: Reverse

Name: yqjB

Synonym: BSU23940

Alternate gene names: 16079450

Gene position: 2489483-2488953 (Counterclockwise)

Preceding gene: 255767523

Following gene: 255767522

Centisome position: 59.05

GC content: 43.88

Gene sequence:

>531_bases
ATGCGTTTTTTCTTATGTTCGATTTTCATGATGATTTCACCGATTTGGCCGCTCGGCGAAAATCCGCTGCCGGGTGATCC
GTATGTTATTGTCAACAAGCGAACAAATGAACTTGCTGTTATCCTCGACAACAAAGTAGAAGGCGTGTATAGTGTGGCGA
CTGGAAAAACAGATGATTTGACGCCTGAAGGAGAGTTTTCGGTAACGGTAAAAGCGGAAAATCCTTACTACAGAAAGAAA
AATATTGAAGGGGGATCTCCTGATAACCCGCTTGGGGCAAGATGGATCGGATTTGACGCGAAAGGAACGGACGGGCGGAT
TTATGGAATTCATGGGACAAACCGAGAGGAATCAGTAGGAAAATTTGTGTCTAACGGCTGTATACGTATGCATAACGATG
AGGTTGTTCATTTGTTTCAAACGATACCAGTAGGAACGAGAGTGCTGATCACGGACGACAACCGCTCTTTTGAGGAGATT
GCCATCGAGCATAAAGCTCTGATAAAAAAGCAGGATATTCCCATTGAATAA

Upstream 100 bases:

>100_bases
GATTAAAAGTTATTTTAAAGGAATAAAAGCGCAAAAATCACTCGGATGATTCGCATGAGCTCTTCCTTCATTGGTCAACC
TAATGAAAAAGGAGGAGCTT

Downstream 100 bases:

>100_bases
GGCGCCTGCTTTTTTATCGTTATAGAAACATGACGATTCCTGAGAGTACAGTTGAAAGAATAAAAACTCCCAAAATCACG
ATCAAAACGCTTTTCATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MRFFLCSIFMMISPIWPLGENPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDLTPEGEFSVTVKAENPYYRKK
NIEGGSPDNPLGARWIGFDAKGTDGRIYGIHGTNREESVGKFVSNGCIRMHNDEVVHLFQTIPVGTRVLITDDNRSFEEI
AIEHKALIKKQDIPIE

Sequences:

>Translated_176_residues
MRFFLCSIFMMISPIWPLGENPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDLTPEGEFSVTVKAENPYYRKK
NIEGGSPDNPLGARWIGFDAKGTDGRIYGIHGTNREESVGKFVSNGCIRMHNDEVVHLFQTIPVGTRVLITDDNRSFEEI
AIEHKALIKKQDIPIE
>Mature_176_residues
MRFFLCSIFMMISPIWPLGENPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDLTPEGEFSVTVKAENPYYRKK
NIEGGSPDNPLGARWIGFDAKGTDGRIYGIHGTNREESVGKFVSNGCIRMHNDEVVHLFQTIPVGTRVLITDDNRSFEEI
AIEHKALIKKQDIPIE

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family

Homologues:

Organism=Escherichia coli, GI1788299, Length=67, Percent_Identity=49.2537313432836, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI1787040, Length=71, Percent_Identity=43.6619718309859, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQJB_BACSU (P54539)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   B69963
- RefSeq:   NP_390274.1
- ProteinModelPortal:   P54539
- SMR:   P54539
- EnsemblBacteria:   EBBACT00000001338
- GeneID:   938684
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU23940
- NMPDR:   fig|224308.1.peg.2398
- GenoList:   BSU23940
- GeneTree:   EBGT00050000001751
- HOGENOM:   HBG295778
- OMA:   PYYRKKN
- ProtClustDB:   CLSK2752444
- BioCyc:   BSUB:BSU23940-MONOMER
- InterPro:   IPR005490

Pfam domain/function: PF03734 YkuD

EC number: NA

Molecular weight: Translated: 19694; Mature: 19694

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFFLCSIFMMISPIWPLGENPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDL
CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCC
TPEGEFSVTVKAENPYYRKKNIEGGSPDNPLGARWIGFDAKGTDGRIYGIHGTNREESVG
CCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHH
KFVSNGCIRMHNDEVVHLFQTIPVGTRVLITDDNRSFEEIAIEHKALIKKQDIPIE
HHHHCCEEEECCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRFFLCSIFMMISPIWPLGENPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDL
CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCC
TPEGEFSVTVKAENPYYRKKNIEGGSPDNPLGARWIGFDAKGTDGRIYGIHGTNREESVG
CCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHH
KFVSNGCIRMHNDEVVHLFQTIPVGTRVLITDDNRSFEEIAIEHKALIKKQDIPIE
HHHHCCEEEECCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377