Click here to switch to the map view.

The map label for this gene is ypbE

Identifier: 16079357

GI number: 16079357

Start: 2405620

End: 2406342

Strand: Reverse

Name: ypbE

Synonym: BSU23000

Alternate gene names: 16079357

Gene position: 2406342-2405620 (Counterclockwise)

Preceding gene: 16079358

Following gene: 16079356

Centisome position: 57.08

GC content: 41.63

Gene sequence:

>723_bases
ATGACGAACATGTCGAGAGTAGAGAGAAGAAAAGCCCAGAATCTTTATGAAGATCAAAACGCCGCATTGGCGGACGATTA
TGTCGATGATGGAGAAAGCCTTCCGACAAGACAATCTGTAAAAAATCAAAGAGAACAGAAAAAAAAGCAAGGCAAAACAA
AAACGCCATTATTCACAGTACTCGCAGTAATATTTGTATTTGTGCCGGTTATCGTTTTAGTCACCTTATTTTATCTAAAG
AGCCACCCGGATAATCATGACGATTATGAAGATGTTTTTATTGACAGCAGCCAAAGCAAATATGAGGTTGTCCCGAAATC
AGAGGATAAAAACGATACCGCAGACACTAAAGAAACCGCACTGCAGAAGGAGTCAAAAAAAGAGCCAGAAGATTCCAAGC
CAAAAGAGCAAACAGCTGCTGATAAGAAACAGACTGCTGTAGCGGAAAAAGAAGACTCGCCAAATAAGGAGGAAGCAACC
GCCGCGGCTGCTTCCTCTTCCCAATCAACAGTACAACAGCAAGAACAGCCAGCTGAGCCAGTTCAAAATGTGCCGAATCG
CGTTGTCAAGCACACCGTCCAAAAGAAAGAAACGCTATACCGCATTTCCATGAAGTATTATAAAAGCCGGACAGGAGAAG
AAAAAATTCGAGCATATAATCATCTGAATGGAAATGATGTTTACACCGGACAAGTTTTGGACATCCCTTTAATGGATGAA
TAG

Upstream 100 bases:

>100_bases
GAATGGACCGGCAACTTATTTGTTCCGATGACGGCGCATTTTATCATTGATGCCGTGTTTGCCTGTCAGATTCGTTTTGA
ACATGTGAGGAGGGATAAAC

Downstream 100 bases:

>100_bases
GGTATTATTTTTATTTTACGTTCATATATTGTAGCAATGAAAATGGACAAGGTGTGAAGCGTATGGAATCCTTATGGAAT
CAGCTGGATCAGTTTACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTNMSRVERRKAQNLYEDQNAALADDYVDDGESLPTRQSVKNQREQKKKQGKTKTPLFTVLAVIFVFVPVIVLVTLFYLK
SHPDNHDDYEDVFIDSSQSKYEVVPKSEDKNDTADTKETALQKESKKEPEDSKPKEQTAADKKQTAVAEKEDSPNKEEAT
AAAASSSQSTVQQQEQPAEPVQNVPNRVVKHTVQKKETLYRISMKYYKSRTGEEKIRAYNHLNGNDVYTGQVLDIPLMDE

Sequences:

>Translated_240_residues
MTNMSRVERRKAQNLYEDQNAALADDYVDDGESLPTRQSVKNQREQKKKQGKTKTPLFTVLAVIFVFVPVIVLVTLFYLK
SHPDNHDDYEDVFIDSSQSKYEVVPKSEDKNDTADTKETALQKESKKEPEDSKPKEQTAADKKQTAVAEKEDSPNKEEAT
AAAASSSQSTVQQQEQPAEPVQNVPNRVVKHTVQKKETLYRISMKYYKSRTGEEKIRAYNHLNGNDVYTGQVLDIPLMDE
>Mature_239_residues
TNMSRVERRKAQNLYEDQNAALADDYVDDGESLPTRQSVKNQREQKKKQGKTKTPLFTVLAVIFVFVPVIVLVTLFYLKS
HPDNHDDYEDVFIDSSQSKYEVVPKSEDKNDTADTKETALQKESKKEPEDSKPKEQTAADKKQTAVAEKEDSPNKEEATA
AAASSSQSTVQQQEQPAEPVQNVPNRVVKHTVQKKETLYRISMKYYKSRTGEEKIRAYNHLNGNDVYTGQVLDIPLMDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPBE_BACSU (P50731)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- PIR:   H69932
- RefSeq:   NP_390181.1
- ProteinModelPortal:   P50731
- SMR:   P50731
- EnsemblBacteria:   EBBACT00000003528
- GeneID:   938971
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU23000
- NMPDR:   fig|224308.1.peg.2304
- GenoList:   BSU23000
- GeneTree:   EBGT00050000000304
- HOGENOM:   HBG338138
- OMA:   TIFRYPL
- ProtClustDB:   CLSK887506
- BioCyc:   BSUB:BSU23000-MONOMER
- InterPro:   IPR018392
- InterPro:   IPR002482
- SMART:   SM00257

Pfam domain/function: PF01476 LysM

EC number: NA

Molecular weight: Translated: 27289; Mature: 27157

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x109e7d18)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNMSRVERRKAQNLYEDQNAALADDYVDDGESLPTRQSVKNQREQKKKQGKTKTPLFTV
CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
LAVIFVFVPVIVLVTLFYLKSHPDNHDDYEDVFIDSSQSKYEVVPKSEDKNDTADTKETA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCCEECCCCCCCCCCCCHHHHHH
LQKESKKEPEDSKPKEQTAADKKQTAVAEKEDSPNKEEATAAAASSSQSTVQQQEQPAEP
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHH
VQNVPNRVVKHTVQKKETLYRISMKYYKSRTGEEKIRAYNHLNGNDVYTGQVLDIPLMDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCEEECCCCCH
>Mature Secondary Structure 
TNMSRVERRKAQNLYEDQNAALADDYVDDGESLPTRQSVKNQREQKKKQGKTKTPLFTV
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
LAVIFVFVPVIVLVTLFYLKSHPDNHDDYEDVFIDSSQSKYEVVPKSEDKNDTADTKETA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCCEECCCCCCCCCCCCHHHHHH
LQKESKKEPEDSKPKEQTAADKKQTAVAEKEDSPNKEEATAAAASSSQSTVQQQEQPAEP
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHH
VQNVPNRVVKHTVQKKETLYRISMKYYKSRTGEEKIRAYNHLNGNDVYTGQVLDIPLMDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCEEECCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377