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The map label for this gene is ypbD

Identifier: 16079358

GI number: 16079358

Start: 2406293

End: 2406862

Strand: Reverse

Name: ypbD

Synonym: BSU23010

Alternate gene names: 16079358

Gene position: 2406862-2406293 (Counterclockwise)

Preceding gene: 16079359

Following gene: 16079357

Centisome position: 57.09

GC content: 41.4

Gene sequence:

>570_bases
TTGACGCAGCTACTCATCATCTTTGCCGCTGCTGCAGCAGGACTGTTCTTTTTTGAGGATGTACGGGACGTATTAAAGCT
CTGGGACATTCGCGATATGCGAATCATCTGGTATGGTGTTTCTATAGCTGTTATTGTTATTTTAGCCGATATGGCAGTAA
TGAAATGGTTTCCGTCTCATTTATATGATGACGGCGGAATCAATAAAAAAATATTCAGTAAGAGGTCAATCCCTCATATT
ATATTTTTAACGCTTCTGATTGCTTTCGCGGAAGAAATGTTATTCAGAGGAGTGCTGCAGACTCATATCGGTTTATGGAC
GGCCAGCCTTATATTTGCCGCTCTGCACTTTCGGTATTTGTCAAAATGGCTGTTATTTATTATGGTGACAGCAATCAGCT
TTTTGCTCGGTCTGATGTATGAATGGACCGGCAACTTATTTGTTCCGATGACGGCGCATTTTATCATTGATGCCGTGTTT
GCCTGTCAGATTCGTTTTGAACATGTGAGGAGGGATAAACATGACGAACATGTCGAGAGTAGAGAGAAGAAAAGCCCAGA
ATCTTTATGA

Upstream 100 bases:

>100_bases
ACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGAAACAGCAAAAAGATTATATTCAGCATATGACTGACCATG
ATATGCTGAAGCAGTTATAT

Downstream 100 bases:

>100_bases
AGATCAAAACGCCGCATTGGCGGACGATTATGTCGATGATGGAGAAAGCCTTCCGACAAGACAATCTGTAAAAAATCAAA
GAGAACAGAAAAAAAAGCAA

Product: membrane protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSHLYDDGGINKKIFSKRSIPHI
IFLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVF
ACQIRFEHVRRDKHDEHVESREKKSPESL

Sequences:

>Translated_189_residues
MTQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSHLYDDGGINKKIFSKRSIPHI
IFLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVF
ACQIRFEHVRRDKHDEHVESREKKSPESL
>Mature_188_residues
TQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSHLYDDGGINKKIFSKRSIPHII
FLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVFA
CQIRFEHVRRDKHDEHVESREKKSPESL

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPBD_BACSU (P50730)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- PIR:   G69932
- RefSeq:   NP_390182.1
- ProteinModelPortal:   P50730
- EnsemblBacteria:   EBBACT00000002337
- GeneID:   938972
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU23010
- NMPDR:   fig|224308.1.peg.2305
- GenoList:   BSU23010
- GeneTree:   EBGT00050000000918
- HOGENOM:   HBG363122
- OMA:   DDDSINE
- ProtClustDB:   CLSK2518246
- BioCyc:   BSUB:BSU23010-MONOMER
- InterPro:   IPR003675

Pfam domain/function: PF02517 Abi

EC number: NA

Molecular weight: Translated: 21981; Mature: 21850

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x10124f84)-; HASH(0x105599a4)-; HASH(0x10376220)-; HASH(0x104dca10)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYL
HCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVFACQIRFEHVRRDKHDEHVES
HHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
REKKSPESL
HHCCCCCCH
>Mature Secondary Structure 
TQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYL
HCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVFACQIRFEHVRRDKHDEHVES
HHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
REKKSPESL
HHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377