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The map label for this gene is ypeB

Identifier: 16079349

GI number: 16079349

Start: 2397765

End: 2399117

Strand: Reverse

Name: ypeB

Synonym: BSU22920

Alternate gene names: 16079349

Gene position: 2399117-2397765 (Counterclockwise)

Preceding gene: 16079350

Following gene: 16079348

Centisome position: 56.91

GC content: 39.76

Gene sequence:

>1353_bases
ATGATCAGAGGAATTTTAATCGCCGTGCTTGGTATTGCAATAGTCGGTACAGGCTACTGGGGATACAAAGAACACCAGGA
AAAAGACGCAGTTCTTCTTCATGCTGAAAATAACTATCAGCGGGCGTTTCATGAGCTTACCTATCAGGTGGATCAGCTTC
ATGATAAAATCGGAACAACACTTGCCATGAACAGCCAAAAATCACTGTCGCCTGCATTGATCGATGTGTGGAGGATTACA
TCAGAAGCTCATAACAGCGTCAGTCAGCTGCCGCTTACATTAATGCCGTTTAATAAAACTGAAGAGCTATTATCAAAGAT
CGGCGATTTCAGCTATAAAACGTCAGTCAGAGATTTGGACCAAAAGCCGCTTGATAAAAACGAGTATACATCACTAAATA
AGCTATATCAGCAGTCCGAAGATATACAAAATGAATTGCGTCATGTTCAGCACCTTGTCATGAGCAAAAACCTTCGCTGG
ATGGACGTAGAAATGGCTCTGGCTTCTGACGAAAAACAAAGTGATAATACGATTATCAACAGCTTTAAAACAGTCGAAAA
AAATGTTGGTGCATTCTCCACTGGCACTGATCTTGGCCCGAGTTTCACCAGTACGAAAAAAGAAGAGAAAGGCTTCAGCC
ATCTGAAGGGAAAACAAATTTCCGAACAGGAAGCAAAACAAATTGCTGAGCGCTTTGCCCCAGATGACAATTATTCAATT
AAAGTGGTAAAGAGCGGAAAAAAAACAAATCGCGATGTATATAGCATCAGCATGAAAGACCCAGACCATAAAGCAGTGAT
TTATATGGATATTACGAAGAAGGGCGGGCATCCGGTATACTTGATCCAAAACAGAGAAGTGAAAGATCAGAAAATCAGTT
TAAATGACGGATCGAACCGAGCGCTTGCATTTTTAAAGAAAAACGGATTTGAAACAGATGATTTGGAAATTGATGAAAGT
GCCCAATATGATAAAATCGGTGTATTTTCATATGTTCCTGTTGAAAATAAAGTCCGGATGTACCCCGAGGCAATTCGTAT
GAAAGTGGCCTTGGATGACGGTGAGGTTGTCGGCTTTTCAGCAAGAGACTTCCTCACATCTCACAGAAAAAGAACCATAC
CTAAGCCTGCAATTACTGAAGCAGAGGCAAAGTCTAAATTAAATAAAAATGTACAAGTGAGAGAAACAAGGCTCGCTTTG
ATTACAAATGAACTAGGTCAAGAAGTGTTATGCTACGAAATGCTTGGGACAATTGAAAATGACACATTCAGAATGTATAT
CAATGCCAAAGACGGATCGGAAGAAAAGGTTGAAAAACTAAAAAATGCAGAACCTATATATAAAGACCTATAA

Upstream 100 bases:

>100_bases
ACAAGTCCGTGGATTTGGGGGCGTCCGCAGATTAAAAGAATCGGTAAACACATTTTCTGTGAGTAGCAGATATGAGAAAG
CATAAAAAGAGGTGTGATAA

Downstream 100 bases:

>100_bases
AAACAGGAGGAAAGGACTAAATGTCTTTTCCTTTTTTTCATTACGTGCTTTAATAAAAACGTGAGTATATTGAATGCGAA
AGAGTGAAGTCAATGATAGA

Product: spore membrane component

Products: NA

Alternate protein names: PSPA12

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRIT
SEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRW
MDVEMALASDEKQSDNTIINSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSI
KVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDES
AQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLAL
ITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKVEKLKNAEPIYKDL

Sequences:

>Translated_450_residues
MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRIT
SEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRW
MDVEMALASDEKQSDNTIINSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSI
KVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDES
AQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLAL
ITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKVEKLKNAEPIYKDL
>Mature_450_residues
MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRIT
SEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRW
MDVEMALASDEKQSDNTIINSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSI
KVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDES
AQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLAL
ITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKVEKLKNAEPIYKDL

Specific function: Required for spore cortex hydrolysis during germination. Appears to be required for either expression, localization, activation or function of sleB

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ypeB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPEB_BACSU (P38490)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- EMBL:   D79978
- EMBL:   U11687
- EMBL:   M22904
- PIR:   E69934
- RefSeq:   NP_390173.1
- ProteinModelPortal:   P38490
- EnsemblBacteria:   EBBACT00000001073
- GeneID:   938981
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22920
- NMPDR:   fig|224308.1.peg.2296
- GenoList:   BSU22920
- GeneTree:   EBGT00050000001827
- HOGENOM:   HBG313412
- OMA:   HAENNYQ
- ProtClustDB:   CLSK873085
- BioCyc:   BSUB:BSU22920-MONOMER
- InterPro:   IPR014239
- TIGRFAMs:   TIGR02889

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51186; Mature: 51186

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTT
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCE
LAMNSQKSLSPALIDVWRITSEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLD
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCHHCHHHHHC
QKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRWMDVEMALASDEKQSDNTIIN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHH
SFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSI
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCCHHHHHHHHHHCCCCCCCEE
KVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNR
EEEECCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCC
ALAFLKKNGFETDDLEIDESAQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFS
EEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCEEEEEEECCCCEEEEC
ARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLALITNELGQEVLCYEMLGTIEN
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCHHHHHHHHHCCCCC
DTFRMYINAKDGSEEKVEKLKNAEPIYKDL
CEEEEEEECCCCCHHHHHHHCCCCCHHHCC
>Mature Secondary Structure
MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTT
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCE
LAMNSQKSLSPALIDVWRITSEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLD
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCHHCHHHHHC
QKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRWMDVEMALASDEKQSDNTIIN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHH
SFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSI
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCCHHHHHHHHHHCCCCCCCEE
KVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNR
EEEECCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCC
ALAFLKKNGFETDDLEIDESAQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFS
EEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCEEEEEEECCCCEEEEC
ARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLALITNELGQEVLCYEMLGTIEN
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCHHHHHHHHHCCCCC
DTFRMYINAKDGSEEKVEKLKNAEPIYKDL
CEEEEEEECCCCCHHHHHHHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 8830707; 3145906; 10658652; 12177332