Click here to switch to the map view.

The map label for this gene is ypfA

Identifier: 16079348

GI number: 16079348

Start: 2397019

End: 2397672

Strand: Reverse

Name: ypfA

Synonym: BSU22910

Alternate gene names: 16079348

Gene position: 2397672-2397019 (Counterclockwise)

Preceding gene: 16079349

Following gene: 16079347

Centisome position: 56.88

GC content: 41.28

Gene sequence:

>654_bases
ATGATAGAGATTGGAGAAAATGTACTTTTAGAATATATAGAAGAAAATGAATTGAAAAAGGCAAAAAGCAAGGCGGTCAG
CATCGAAAACAATGAACTTTTGATCGCGTATCCTGTTGATGTAGTTACAGGGCGAACTGTGATTTTACATAACGATATGG
AAGTAACGGTAGAGTTTGTGGGAAAAGACGAAGTTCCTTATCGCTTTATAAGCCGTATAAAAGGTAAAGTGAAGGACAAA
CTTCAAATGATCTGTCTTGAAATGCCTCCCCGTGAAAAAATGAAAAGAATCCAGCGCCGCCAATATGTAAGAACTGATGC
GGTATTAGATGTGCAAATTCAGCCGGGAAATGAAGAAGAGATCCGCACACTATCCTATAACATCAGTGCAGGCGGCATCG
CCGTGGTTTTAGCTGATGGCCTTTCTTTTCAATCGGGGGAATCATTGCGCCTGATCATCCGTCTTCCTGAAGAGGAGCAC
ACACGTCAAATAGAAACAGAAGCAGTTGTCAGACGAATCTTTAATGACCCCAAGTCAGAAAAACGAAAAATGACTTTAGA
GTATTCAGAAATTGCAGCAGGTGACCAGCAGGCTTTGCTTCAATACTGCATCAGGCGCCAGTTAAATAAGAGAAGAAAGG
CCCGAATGGAATAA

Upstream 100 bases:

>100_bases
ACCTATAAAAACAGGAGGAAAGGACTAAATGTCTTTTCCTTTTTTTCATTACGTGCTTTAATAAAAACGTGAGTATATTG
AATGCGAAAGAGTGAAGTCA

Downstream 100 bases:

>100_bases
ACATCGGCAAACACTTCCATACTATTTGTAATGGAGGTGCTCCAATGAAAACATTTGAACGGCTGCTGATCAAATTATTG
TTCATTCAGGCCATCATTTT

Product: cyclic diGMP binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIEIGENVLLEYIEENELKKAKSKAVSIENNELLIAYPVDVVTGRTVILHNDMEVTVEFVGKDEVPYRFISRIKGKVKDK
LQMICLEMPPREKMKRIQRRQYVRTDAVLDVQIQPGNEEEIRTLSYNISAGGIAVVLADGLSFQSGESLRLIIRLPEEEH
TRQIETEAVVRRIFNDPKSEKRKMTLEYSEIAAGDQQALLQYCIRRQLNKRRKARME

Sequences:

>Translated_217_residues
MIEIGENVLLEYIEENELKKAKSKAVSIENNELLIAYPVDVVTGRTVILHNDMEVTVEFVGKDEVPYRFISRIKGKVKDK
LQMICLEMPPREKMKRIQRRQYVRTDAVLDVQIQPGNEEEIRTLSYNISAGGIAVVLADGLSFQSGESLRLIIRLPEEEH
TRQIETEAVVRRIFNDPKSEKRKMTLEYSEIAAGDQQALLQYCIRRQLNKRRKARME
>Mature_217_residues
MIEIGENVLLEYIEENELKKAKSKAVSIENNELLIAYPVDVVTGRTVILHNDMEVTVEFVGKDEVPYRFISRIKGKVKDK
LQMICLEMPPREKMKRIQRRQYVRTDAVLDVQIQPGNEEEIRTLSYNISAGGIAVVLADGLSFQSGESLRLIIRLPEEEH
TRQIETEAVVRRIFNDPKSEKRKMTLEYSEIAAGDQQALLQYCIRRQLNKRRKARME

Specific function: Unknown

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPFA_BACSU (P38491)

Other databases:

- EMBL:   U11687
- EMBL:   L47648
- EMBL:   AL009126
- PIR:   H69934
- RefSeq:   NP_390172.1
- ProteinModelPortal:   P38491
- EnsemblBacteria:   EBBACT00000000033
- GeneID:   938984
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22910
- NMPDR:   fig|224308.1.peg.2295
- GenoList:   BSU22910
- GeneTree:   EBGT00050000006243
- HOGENOM:   HBG345099
- OMA:   LIRYSFE
- ProtClustDB:   CLSK873086
- BioCyc:   BSUB:BSU22910-MONOMER
- InterPro:   IPR009875

Pfam domain/function: PF07238 PilZ

EC number: NA

Molecular weight: Translated: 25133; Mature: 25133

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIGENVLLEYIEENELKKAKSKAVSIENNELLIAYPVDVVTGRTVILHNDMEVTVEFV
CCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCHHHCCCEEEEECCCEEEEEEE
GKDEVPYRFISRIKGKVKDKLQMICLEMPPREKMKRIQRRQYVRTDAVLDVQIQPGNEEE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
IRTLSYNISAGGIAVVLADGLSFQSGESLRLIIRLPEEEHTRQIETEAVVRRIFNDPKSE
EEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH
KRKMTLEYSEIAAGDQQALLQYCIRRQLNKRRKARME
HHEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEIGENVLLEYIEENELKKAKSKAVSIENNELLIAYPVDVVTGRTVILHNDMEVTVEFV
CCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCHHHCCCEEEEECCCEEEEEEE
GKDEVPYRFISRIKGKVKDKLQMICLEMPPREKMKRIQRRQYVRTDAVLDVQIQPGNEEE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
IRTLSYNISAGGIAVVLADGLSFQSGESLRLIIRLPEEEHTRQIETEAVVRRIFNDPKSE
EEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH
KRKMTLEYSEIAAGDQQALLQYCIRRQLNKRRKARME
HHEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377