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The map label for this gene is yprB

Identifier: 16079279

GI number: 16079279

Start: 2333324

End: 2334565

Strand: Reverse

Name: yprB

Synonym: BSU22210

Alternate gene names: 16079279

Gene position: 2334565-2333324 (Counterclockwise)

Preceding gene: 16079280

Following gene: 16079278

Centisome position: 55.38

GC content: 44.61

Gene sequence:

>1242_bases
ATGTCATTAAAAGGGAAACTCCAACGGATGAAAAAGCACATGGCGCTCGACGAAGGAGAACAAAAAATAGAAGCAGGCAA
ACAAGAAAACCACTTTGATGACATCCCGTTTTTAGAAGAGTGGGAGGCTTTTGGCATGAAGCCTTTCATCTTCGAAGATG
AATATTGCCTCATCAGAGAAGTAGAATATCCGCTTTCTCACCGCCATGGGTTATACAGCTTTTCTGAGCTTGAGGAAGTG
ATCACACTGTGGAATCAAAGCGGCCTGTCGCATACATTGTCAGCAAAAGGGTATAACAAAAACAACCTCTTTTTCTTTGA
TACAGAAACAACCGGTCTTGGGGGTGGAGCTGGGAATACCATTTTTTTGCTTGGGCATGCGAGAGTATATGAAGACCGAG
TGACAGTCAAACAGCATCTTTTGCCCAAACCGGGGAACGAAGTCGCCTTGTACCAAAGCTTTTTAAGCGAGGTTGACATT
ACATCACTTGTGACCTACAACGGCAAAGCCTTTGATTGGCCGCAGGTGAAAACAAGGCACACCTTGATCCGTGACAGACT
TCCGAAGCTTCCGGAGTTTGGCCACTTTGATCTTTTGCATGGAGCTAGACGCCTGTGGAAACACAAAATGGACCGTGTAT
CTCTTGGCACGGTTGAAAAAGAGGAGCTCGGCATCCGCAGGCTAGAAGACACACCGGGCTACTTGGCGCCAATGCTTTAC
TTTCATTTTATCAAGGCGCAAGAGCCGGATCTTTTAAAAGGTGTCCTGCATCATAATGAAATGGATGTGTTATCACTCAT
TTCATTGTACATCCATATGTCTAAAAAAATCCTTTCAGAATCACATGCGCCAAAAGAACACAGTGAAGCCTATGCTATGG
CGAAATGGTTTATGGCTCATAAAGAAACGGACCAAGCGATCAAGCAGTTGGAAAGGCTTATAGAAAAATCGTTTGAGGAC
CAGGACAGTGCACGGCTGGATTTATCGCTCCTGTACAAAAAACAAAACCGCTTGGAAGAAGCAGTGCCGCTTTGGGAAAA
GCTGTCCCGCTCGCAAAACCAGAAGTGCAGATACGCTGCTGTAATAGAGCTCGCGAAATATTTTGAGCATAAGAAAAAAG
AATTCGGAAAAGCATTGCAAGTAGCAGAGCAATCGCTTAGCGATGCGGCATGCTTATCAGAGAAAGAAACTGAAAAACTG
CATGTGAGAATTGCCCGGCTAAAGAGGAAATATTCCTCTTAA

Upstream 100 bases:

>100_bases
CGGCTGTCCGTCTTGTATAGGTACGGAAATAGAAGGGATAAAAGCAAAGGAAAGAATTTTGCAGCTGTTGGATCAAATGT
CGTAAGGAGGGAGGCCGGAT

Downstream 100 bases:

>100_bases
ATATTCCCCGGGAAAGCGCAAAAGACGACTTGTTTCGCCATGAATTTTTTTTGCTGAATTCACATTGATTTTGTTGTAGA
ATAGCGGCGAATCCTGTAAA

Product: nucleic acid binding enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSLKGKLQRMKKHMALDEGEQKIEAGKQENHFDDIPFLEEWEAFGMKPFIFEDEYCLIREVEYPLSHRHGLYSFSELEEV
ITLWNQSGLSHTLSAKGYNKNNLFFFDTETTGLGGGAGNTIFLLGHARVYEDRVTVKQHLLPKPGNEVALYQSFLSEVDI
TSLVTYNGKAFDWPQVKTRHTLIRDRLPKLPEFGHFDLLHGARRLWKHKMDRVSLGTVEKEELGIRRLEDTPGYLAPMLY
FHFIKAQEPDLLKGVLHHNEMDVLSLISLYIHMSKKILSESHAPKEHSEAYAMAKWFMAHKETDQAIKQLERLIEKSFED
QDSARLDLSLLYKKQNRLEEAVPLWEKLSRSQNQKCRYAAVIELAKYFEHKKKEFGKALQVAEQSLSDAACLSEKETEKL
HVRIARLKRKYSS

Sequences:

>Translated_413_residues
MSLKGKLQRMKKHMALDEGEQKIEAGKQENHFDDIPFLEEWEAFGMKPFIFEDEYCLIREVEYPLSHRHGLYSFSELEEV
ITLWNQSGLSHTLSAKGYNKNNLFFFDTETTGLGGGAGNTIFLLGHARVYEDRVTVKQHLLPKPGNEVALYQSFLSEVDI
TSLVTYNGKAFDWPQVKTRHTLIRDRLPKLPEFGHFDLLHGARRLWKHKMDRVSLGTVEKEELGIRRLEDTPGYLAPMLY
FHFIKAQEPDLLKGVLHHNEMDVLSLISLYIHMSKKILSESHAPKEHSEAYAMAKWFMAHKETDQAIKQLERLIEKSFED
QDSARLDLSLLYKKQNRLEEAVPLWEKLSRSQNQKCRYAAVIELAKYFEHKKKEFGKALQVAEQSLSDAACLSEKETEKL
HVRIARLKRKYSS
>Mature_412_residues
SLKGKLQRMKKHMALDEGEQKIEAGKQENHFDDIPFLEEWEAFGMKPFIFEDEYCLIREVEYPLSHRHGLYSFSELEEVI
TLWNQSGLSHTLSAKGYNKNNLFFFDTETTGLGGGAGNTIFLLGHARVYEDRVTVKQHLLPKPGNEVALYQSFLSEVDIT
SLVTYNGKAFDWPQVKTRHTLIRDRLPKLPEFGHFDLLHGARRLWKHKMDRVSLGTVEKEELGIRRLEDTPGYLAPMLYF
HFIKAQEPDLLKGVLHHNEMDVLSLISLYIHMSKKILSESHAPKEHSEAYAMAKWFMAHKETDQAIKQLERLIEKSFEDQ
DSARLDLSLLYKKQNRLEEAVPLWEKLSRSQNQKCRYAAVIELAKYFEHKKKEFGKALQVAEQSLSDAACLSEKETEKLH
VRIARLKRKYSS

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPRB_BACSU (P50837)

Other databases:

- EMBL:   L47838
- EMBL:   AL009126
- EMBL:   M22908
- PIR:   C69941
- RefSeq:   NP_390103.1
- ProteinModelPortal:   P50837
- EnsemblBacteria:   EBBACT00000002584
- GeneID:   939050
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22210
- NMPDR:   fig|224308.1.peg.2226
- GenoList:   BSU22210
- GeneTree:   EBGT00050000002684
- HOGENOM:   HBG338124
- OMA:   NGKAFDW
- ProtClustDB:   CLSK873120
- BioCyc:   BSUB:BSU22210-MONOMER
- InterPro:   IPR012337
- InterPro:   IPR011990
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 47996; Mature: 47864

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKGKLQRMKKHMALDEGEQKIEAGKQENHFDDIPFLEEWEAFGMKPFIFEDEYCLIRE
CCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEHH
VEYPLSHRHGLYSFSELEEVITLWNQSGLSHTLSAKGYNKNNLFFFDTETTGLGGGAGNT
CCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCE
IFLLGHARVYEDRVTVKQHLLPKPGNEVALYQSFLSEVDITSLVTYNGKAFDWPQVKTRH
EEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHH
TLIRDRLPKLPEFGHFDLLHGARRLWKHKMDRVSLGTVEKEELGIRRLEDTPGYLAPMLY
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCCCCCHHHHHHH
FHFIKAQEPDLLKGVLHHNEMDVLSLISLYIHMSKKILSESHAPKEHSEAYAMAKWFMAH
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KETDQAIKQLERLIEKSFEDQDSARLDLSLLYKKQNRLEEAVPLWEKLSRSQNQKCRYAA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VIELAKYFEHKKKEFGKALQVAEQSLSDAACLSEKETEKLHVRIARLKRKYSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLKGKLQRMKKHMALDEGEQKIEAGKQENHFDDIPFLEEWEAFGMKPFIFEDEYCLIRE
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEHH
VEYPLSHRHGLYSFSELEEVITLWNQSGLSHTLSAKGYNKNNLFFFDTETTGLGGGAGNT
CCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCE
IFLLGHARVYEDRVTVKQHLLPKPGNEVALYQSFLSEVDITSLVTYNGKAFDWPQVKTRH
EEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHH
TLIRDRLPKLPEFGHFDLLHGARRLWKHKMDRVSLGTVEKEELGIRRLEDTPGYLAPMLY
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCCCCCHHHHHHH
FHFIKAQEPDLLKGVLHHNEMDVLSLISLYIHMSKKILSESHAPKEHSEAYAMAKWFMAH
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KETDQAIKQLERLIEKSFEDQDSARLDLSLLYKKQNRLEEAVPLWEKLSRSQNQKCRYAA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VIELAKYFEHKKKEFGKALQVAEQSLSDAACLSEKETEKLHVRIARLKRKYSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906