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The map label for this gene is yopC

Identifier: 16079153

GI number: 16079153

Start: 2213536

End: 2214864

Strand: Reverse

Name: yopC

Synonym: BSU20940

Alternate gene names: 16079153

Gene position: 2214864-2213536 (Counterclockwise)

Preceding gene: 16079154

Following gene: 16079152

Centisome position: 52.54

GC content: 31.53

Gene sequence:

>1329_bases
ATGGATTTGTATAGAAAAGCTAAAAGGCTAAAAAAAGAATTATCGAAACATGAGGAAATTAATGATTCTTTGAAAGAGCT
TGCATTTGATATTTTTAAAGAGTTAACAGTAAAACCTGAATTTATAGACAAAAACACCAATGATGTTATTGGGGAGGAAA
AAATTAACACCAGCACCTTTTCAAATAAAGAAAGGTTAGACATTTTAATTGAATGGACTATTGAAATAGATCCAATATTA
AGTTTTATTATTGATAAATGCGATATTCCAATAGAAAGAACGGGTGGGGATGATTTAGATGCTTTTATGGAGAATGTTTA
TACAGAATATATAGAAGAATTGCATAAGCTACCAAATAGAAAATCATTCGATTCATCAAAAATCACAAAGATAGAATCTT
TTGCGCAACAAATTACTAAAACAATTGAACTTTACTTAGATGGTTATGTGCATTTAGCATATGCTGAATTTGATAAAGGA
ATGAATATCTTTTCTGAAGAGGTTAACATTGAAGAGCTGCTCTTATATAACATTGATAGTATTCGTATTCCTTGTAAATT
CTTTAGAATGAGAACCAGTAACACAGAGGTTTTTTCTAAAGATGATATGTTTCATATACCATTTGAGAAGAGAGGAATAA
TACGCACAAATCGTTTTAGTATACCAGGATTTCCATGTCTTTACCTTGGAAGTTCATCACTTGTTTGTTGGGAAGAACTA
GGAAGGCCTGACTTAAATACTACCTACACTTCGGTTTTTCACCTTGAGGATGAAGATATAAAAATTCTGGATTTAAGTGT
TTCACCTACGGAACTGGCAGATAATCTAAAGAAATTTTTTGAAATAACATTTAGAAGAAAAATATATAAATTTAATGCAT
ACTTTATGACATGGATTTTAATATCTGCATGCCTAATTAGAGTAAAAAAACAAAAAGACATTTTTAAACCAGAATATATC
ATTCCTCAATTTTTGCTTGAATGGGTTAAACAGACAGAGTCTTCGGAATACTGGGGAATCTGTTATTTGTCTTCTAAGAT
TAACAGACAAACAATTGAAAATTACAAGCTATATAAGAATTATGCTATTCCTGTTAGGCAAAGAAAAGACAGTGGACATT
GTTCGTTATTGGGCGAGACATTCCAAATATCTGACCCCGTAGCTTGGGAAACGTTCCAAAGTCATAAGGACTCACCAGAA
TCGCTTCCTATCAAAAATCCATTATTTCCAGAAACCGAAGGGACTCATCATGATTACCATAAAACAGAGTTGGGGAGACT
AGAGGCCTTTTTAATTAGATATAGATCAGTTGTTAAAGACCAACTGTAA

Upstream 100 bases:

>100_bases
ATACTAAAGTTACAAGCATAGGAAGGAATTACAAGTTTTCCAGGTCTACATAAAATCGTACTTATATGGAAAAGGTGAAA
AATTAATAAGGAGAACATAA

Downstream 100 bases:

>100_bases
CTGAAATCTAAAAACTACGATTTTAAAGGGAAATGTGAAACAAGCGGAGGTGCTGATTTGAGCCTCAATCAAAAAGCGTT
AAACAGTTATGTTTATACTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MDLYRKAKRLKKELSKHEEINDSLKELAFDIFKELTVKPEFIDKNTNDVIGEEKINTSTFSNKERLDILIEWTIEIDPIL
SFIIDKCDIPIERTGGDDLDAFMENVYTEYIEELHKLPNRKSFDSSKITKIESFAQQITKTIELYLDGYVHLAYAEFDKG
MNIFSEEVNIEELLLYNIDSIRIPCKFFRMRTSNTEVFSKDDMFHIPFEKRGIIRTNRFSIPGFPCLYLGSSSLVCWEEL
GRPDLNTTYTSVFHLEDEDIKILDLSVSPTELADNLKKFFEITFRRKIYKFNAYFMTWILISACLIRVKKQKDIFKPEYI
IPQFLLEWVKQTESSEYWGICYLSSKINRQTIENYKLYKNYAIPVRQRKDSGHCSLLGETFQISDPVAWETFQSHKDSPE
SLPIKNPLFPETEGTHHDYHKTELGRLEAFLIRYRSVVKDQL

Sequences:

>Translated_442_residues
MDLYRKAKRLKKELSKHEEINDSLKELAFDIFKELTVKPEFIDKNTNDVIGEEKINTSTFSNKERLDILIEWTIEIDPIL
SFIIDKCDIPIERTGGDDLDAFMENVYTEYIEELHKLPNRKSFDSSKITKIESFAQQITKTIELYLDGYVHLAYAEFDKG
MNIFSEEVNIEELLLYNIDSIRIPCKFFRMRTSNTEVFSKDDMFHIPFEKRGIIRTNRFSIPGFPCLYLGSSSLVCWEEL
GRPDLNTTYTSVFHLEDEDIKILDLSVSPTELADNLKKFFEITFRRKIYKFNAYFMTWILISACLIRVKKQKDIFKPEYI
IPQFLLEWVKQTESSEYWGICYLSSKINRQTIENYKLYKNYAIPVRQRKDSGHCSLLGETFQISDPVAWETFQSHKDSPE
SLPIKNPLFPETEGTHHDYHKTELGRLEAFLIRYRSVVKDQL
>Mature_442_residues
MDLYRKAKRLKKELSKHEEINDSLKELAFDIFKELTVKPEFIDKNTNDVIGEEKINTSTFSNKERLDILIEWTIEIDPIL
SFIIDKCDIPIERTGGDDLDAFMENVYTEYIEELHKLPNRKSFDSSKITKIESFAQQITKTIELYLDGYVHLAYAEFDKG
MNIFSEEVNIEELLLYNIDSIRIPCKFFRMRTSNTEVFSKDDMFHIPFEKRGIIRTNRFSIPGFPCLYLGSSSLVCWEEL
GRPDLNTTYTSVFHLEDEDIKILDLSVSPTELADNLKKFFEITFRRKIYKFNAYFMTWILISACLIRVKKQKDIFKPEYI
IPQFLLEWVKQTESSEYWGICYLSSKINRQTIENYKLYKNYAIPVRQRKDSGHCSLLGETFQISDPVAWETFQSHKDSPE
SLPIKNPLFPETEGTHHDYHKTELGRLEAFLIRYRSVVKDQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOPC_BACSU (O31935)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389977.1
- ProteinModelPortal:   O31935
- EnsemblBacteria:   EBBACT00000003371
- GeneID:   939177
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20940
- NMPDR:   fig|224308.1.peg.2100
- GenoList:   BSU20940
- GeneTree:   EBGT00070000035464
- OMA:   HEEINDS
- ProtClustDB:   CLSK887450
- BioCyc:   BSUB:BSU20940-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52149; Mature: 52149

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLYRKAKRLKKELSKHEEINDSLKELAFDIFKELTVKPEFIDKNTNDVIGEEKINTSTF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCC
SNKERLDILIEWTIEIDPILSFIIDKCDIPIERTGGDDLDAFMENVYTEYIEELHKLPNR
CCCCCEEEEEEEEEEHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
KSFDSSKITKIESFAQQITKTIELYLDGYVHLAYAEFDKGMNIFSEEVNIEELLLYNIDS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCHHHHHHCCHHHHHHCCCCC
IRIPCKFFRMRTSNTEVFSKDDMFHIPFEKRGIIRTNRFSIPGFPCLYLGSSSLVCWEEL
EECCHHHHEEECCCCCEECCCCEEECCCCCCCCEEECCCCCCCCCEEEECCCCEEEHHHC
GRPDLNTTYTSVFHLEDEDIKILDLSVSPTELADNLKKFFEITFRRKIYKFNAYFMTWIL
CCCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISACLIRVKKQKDIFKPEYIIPQFLLEWVKQTESSEYWGICYLSSKINRQTIENYKLYKN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHC
YAIPVRQRKDSGHCSLLGETFQISDPVAWETFQSHKDSPESLPIKNPLFPETEGTHHDYH
CCCCHHCCCCCCCEEEECCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
KTELGRLEAFLIRYRSVVKDQL
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLYRKAKRLKKELSKHEEINDSLKELAFDIFKELTVKPEFIDKNTNDVIGEEKINTSTF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCC
SNKERLDILIEWTIEIDPILSFIIDKCDIPIERTGGDDLDAFMENVYTEYIEELHKLPNR
CCCCCEEEEEEEEEEHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
KSFDSSKITKIESFAQQITKTIELYLDGYVHLAYAEFDKGMNIFSEEVNIEELLLYNIDS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCHHHHHHCCHHHHHHCCCCC
IRIPCKFFRMRTSNTEVFSKDDMFHIPFEKRGIIRTNRFSIPGFPCLYLGSSSLVCWEEL
EECCHHHHEEECCCCCEECCCCEEECCCCCCCCEEECCCCCCCCCEEEECCCCEEEHHHC
GRPDLNTTYTSVFHLEDEDIKILDLSVSPTELADNLKKFFEITFRRKIYKFNAYFMTWIL
CCCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISACLIRVKKQKDIFKPEYIIPQFLLEWVKQTESSEYWGICYLSSKINRQTIENYKLYKN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHC
YAIPVRQRKDSGHCSLLGETFQISDPVAWETFQSHKDSPESLPIKNPLFPETEGTHHDYH
CCCCHHCCCCCCCEEEECCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
KTELGRLEAFLIRYRSVVKDQL
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377