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The map label for this gene is yopD

Identifier: 16079152

GI number: 16079152

Start: 2213083

End: 2213478

Strand: Reverse

Name: yopD

Synonym: BSU20930

Alternate gene names: 16079152

Gene position: 2213478-2213083 (Counterclockwise)

Preceding gene: 16079153

Following gene: 16079151

Centisome position: 52.51

GC content: 35.35

Gene sequence:

>396_bases
TTGAGCCTCAATCAAAAAGCGTTAAACAGTTATGTTTATACTCTGGCGTTTTCAAGTTTGTCATTTGGTCTAATTTTTGG
TCTGTATCTGTTTGTTTACTCTGGATTTATGGCAATAGCATTAGTCACAATTGCCATCATTGCATTTTACGCTTTAATCA
CTTACTTGGTGTTTGCTGCCCCTTTGCAAGTGTGGCTAAGAAGAAGGCGCAGAAAATTCAGTTTGATCAATTTTTTAATT
TATATTGCAGTGGCCTTTTCAGCTGTGTTTTTGTTCTGGTTTGTTGATTATCCGCCAAATGCTCTTACCATGTTCAGAAG
CTTTGAGTATTACATTATGAGTATTGTAGCTGCGTTTATTTATTGGTTTTGGGATTCGATATTCCTACGAAATTAA

Upstream 100 bases:

>100_bases
CTTTTTAATTAGATATAGATCAGTTGTTAAAGACCAACTGTAACTGAAATCTAAAAACTACGATTTTAAAGGGAAATGTG
AAACAAGCGGAGGTGCTGAT

Downstream 100 bases:

>100_bases
CATATTAAATTATGAATTTCACACCGTTTACAACAAGTAAGAAGGCTGCTGATCCAAACAGTAAATATTCGGACAGTTTT
TGTTTGCTTAATATCGCTTC

Product: conserved hypothetical membrane protein; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MSLNQKALNSYVYTLAFSSLSFGLIFGLYLFVYSGFMAIALVTIAIIAFYALITYLVFAAPLQVWLRRRRRKFSLINFLI
YIAVAFSAVFLFWFVDYPPNALTMFRSFEYYIMSIVAAFIYWFWDSIFLRN

Sequences:

>Translated_131_residues
MSLNQKALNSYVYTLAFSSLSFGLIFGLYLFVYSGFMAIALVTIAIIAFYALITYLVFAAPLQVWLRRRRRKFSLINFLI
YIAVAFSAVFLFWFVDYPPNALTMFRSFEYYIMSIVAAFIYWFWDSIFLRN
>Mature_130_residues
SLNQKALNSYVYTLAFSSLSFGLIFGLYLFVYSGFMAIALVTIAIIAFYALITYLVFAAPLQVWLRRRRRKFSLINFLIY
IAVAFSAVFLFWFVDYPPNALTMFRSFEYYIMSIVAAFIYWFWDSIFLRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0715 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOPD_BACSU (O31934)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389976.1
- ProteinModelPortal:   O31934
- EnsemblBacteria:   EBBACT00000000202
- GeneID:   939180
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20930
- NMPDR:   fig|224308.1.peg.2099
- GenoList:   BSU20930
- GeneTree:   EBGT00050000001385
- HOGENOM:   HBG338026
- OMA:   AFYALIT
- ProtClustDB:   CLSK887384
- BioCyc:   BSUB:BSU20930-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15446; Mature: 15314

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfc6a8b0)-; HASH(0xf30f174)-; HASH(0xf79452c)-; HASH(0xfd42d34)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNQKALNSYVYTLAFSSLSFGLIFGLYLFVYSGFMAIALVTIAIIAFYALITYLVFAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLQVWLRRRRRKFSLINFLIYIAVAFSAVFLFWFVDYPPNALTMFRSFEYYIMSIVAAFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YWFWDSIFLRN
HHHHHHHHHCH
>Mature Secondary Structure 
SLNQKALNSYVYTLAFSSLSFGLIFGLYLFVYSGFMAIALVTIAIIAFYALITYLVFAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLQVWLRRRRRKFSLINFLIYIAVAFSAVFLFWFVDYPPNALTMFRSFEYYIMSIVAAFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YWFWDSIFLRN
HHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377