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The map label for this gene is yocD

Identifier: 16078977

GI number: 16078977

Start: 2088257

End: 2089234

Strand: Direct

Name: yocD

Synonym: BSU19170

Alternate gene names: 16078977

Gene position: 2088257-2089234 (Clockwise)

Preceding gene: 16078976

Following gene: 16078978

Centisome position: 49.54

GC content: 41.51

Gene sequence:

>978_bases
ATGTACGCCTCAAAACTGAAAAAGGGAGACGAAATCCGGATCGTGTCTCCCGCGACCAGCATGTCTATATTATCAAATGA
AGCAAAAATCCAAGCAAAAACGGCGTTAGAACGCTTAGGTTATCGGGTAACCATCGCTGAACACGCAAATGAATGTAACG
AATTTGATTCATCCTCTATCGAGTCAAGAGTCCATGATCTGCACGCTGCCTTTTTTGATCCAGGCGTCAAAGCGATTTTA
ACGACACTCGGAGGGTTTAATTCAAATCAGCTGCTGCGTTATCTTGATTACGAGAAAATCAAACGACATCCAAAAATTCT
GTGCGGTTATTCCGATATAACCGCTCTTTGCAACGCTATTTATCAAAAAACGGGTCTTGTTACGTATTCAGGTCCCCACT
TCTCAACATTTGCAATGAAAAAAGGACTCGATTATACAGAGGAGTATTTTCTTTCTTGCTGCGCTTCAGACGATCCGTTT
GAAATTCACCCCTCAAGTGAGTGGAGCGATGATCGCTGGTTTTTGGATCAAGAAAACAGGCGTTTTTATCCTAATAACGG
CCCTGTTGTAATCCAAGAAGGTTATGCGGAAGGTACTTTAATTGGCGGAAACTTATGCACGCTTAATTTGCTGCAGGGAA
CGGAGTATTTTCCCGAAACAGAACATACTATTTTATTGATTGAAGATGATTATATGTCAGACATCCATATGTTTGACCGC
GATCTGCAATCACTCATCCACCTCCCCGCTTTTTCACATGTAAAGGCGATTTTGATCGGCAGATTTCAGAAAGCATCAAA
CGTATCAATAGATCTTGTAAAAGCCATGATCGAAACAAAAAAAGAATTATCCGGCATCCCGATCATCGCAAATATAAATG
CCGGACATACCTCGCCAATTGCCACGTTCCCTATAGGAGGAACATGCAGGATTGAAGCTATTTCGGGTACATCACGAATA
TGGATTGATAAACATTAA

Upstream 100 bases:

>100_bases
TACCCAATCCGGCAGCATTAAGTGGGTTGATTTGTAAAAAAGTCTGGAAGAAAGAGCCAAGATATGCTGTAATGGTATAA
AACCATTGATGGAGGGTTCT

Downstream 100 bases:

>100_bases
TCAGCTTGTAAATTTTTTTACAAGCTTTTTTAGCGCAATCGGCTATGCATGCCGCACGAGACATGACAAATGTCATATAG
GAGGCATGATGTGTGCTACT

Product: carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MYASKLKKGDEIRIVSPATSMSILSNEAKIQAKTALERLGYRVTIAEHANECNEFDSSSIESRVHDLHAAFFDPGVKAIL
TTLGGFNSNQLLRYLDYEKIKRHPKILCGYSDITALCNAIYQKTGLVTYSGPHFSTFAMKKGLDYTEEYFLSCCASDDPF
EIHPSSEWSDDRWFLDQENRRFYPNNGPVVIQEGYAEGTLIGGNLCTLNLLQGTEYFPETEHTILLIEDDYMSDIHMFDR
DLQSLIHLPAFSHVKAILIGRFQKASNVSIDLVKAMIETKKELSGIPIIANINAGHTSPIATFPIGGTCRIEAISGTSRI
WIDKH

Sequences:

>Translated_325_residues
MYASKLKKGDEIRIVSPATSMSILSNEAKIQAKTALERLGYRVTIAEHANECNEFDSSSIESRVHDLHAAFFDPGVKAIL
TTLGGFNSNQLLRYLDYEKIKRHPKILCGYSDITALCNAIYQKTGLVTYSGPHFSTFAMKKGLDYTEEYFLSCCASDDPF
EIHPSSEWSDDRWFLDQENRRFYPNNGPVVIQEGYAEGTLIGGNLCTLNLLQGTEYFPETEHTILLIEDDYMSDIHMFDR
DLQSLIHLPAFSHVKAILIGRFQKASNVSIDLVKAMIETKKELSGIPIIANINAGHTSPIATFPIGGTCRIEAISGTSRI
WIDKH
>Mature_325_residues
MYASKLKKGDEIRIVSPATSMSILSNEAKIQAKTALERLGYRVTIAEHANECNEFDSSSIESRVHDLHAAFFDPGVKAIL
TTLGGFNSNQLLRYLDYEKIKRHPKILCGYSDITALCNAIYQKTGLVTYSGPHFSTFAMKKGLDYTEEYFLSCCASDDPF
EIHPSSEWSDDRWFLDQENRRFYPNNGPVVIQEGYAEGTLIGGNLCTLNLLQGTEYFPETEHTILLIEDDYMSDIHMFDR
DLQSLIHLPAFSHVKAILIGRFQKASNVSIDLVKAMIETKKELSGIPIIANINAGHTSPIATFPIGGTCRIEAISGTSRI
WIDKH

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family

Homologues:

Organism=Escherichia coli, GI1787441, Length=321, Percent_Identity=26.4797507788162, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOCD_BACSU (O35046)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   A69901
- RefSeq:   NP_389798.1
- ProteinModelPortal:   O35046
- SMR:   O35046
- MEROPS:   S66.003
- EnsemblBacteria:   EBBACT00000001142
- GeneID:   939659
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19170
- NMPDR:   fig|224308.1.peg.1921
- GenoList:   BSU19170
- GeneTree:   EBGT00050000001771
- HOGENOM:   HBG497193
- OMA:   KQGDEIR
- PhylomeDB:   O35046
- ProtClustDB:   CLSK2752422
- BioCyc:   BSUB:BSU19170-MONOMER
- InterPro:   IPR003507

Pfam domain/function: PF02016 Peptidase_S66

EC number: NA

Molecular weight: Translated: 36411; Mature: 36411

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: ACT_SITE 111-111 ACT_SITE 229-229 ACT_SITE 296-296

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYASKLKKGDEIRIVSPATSMSILSNEAKIQAKTALERLGYRVTIAEHANECNEFDSSSI
CCCHHCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCHHHH
ESRVHDLHAAFFDPGVKAILTTLGGFNSNQLLRYLDYEKIKRHPKILCGYSDITALCNAI
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCEEEECHHHHHHHHHHH
YQKTGLVTYSGPHFSTFAMKKGLDYTEEYFLSCCASDDPFEIHPSSEWSDDRWFLDQENR
HHHCCEEEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEECCCC
RFYPNNGPVVIQEGYAEGTLIGGNLCTLNLLQGTEYFPETEHTILLIEDDYMSDIHMFDR
EECCCCCCEEEECCCCCCEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
DLQSLIHLPAFSHVKAILIGRFQKASNVSIDLVKAMIETKKELSGIPIIANINAGHTSPI
HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCE
ATFPIGGTCRIEAISGTSRIWIDKH
EEECCCCEEEEEEECCCEEEEEECC
>Mature Secondary Structure
MYASKLKKGDEIRIVSPATSMSILSNEAKIQAKTALERLGYRVTIAEHANECNEFDSSSI
CCCHHCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCHHHH
ESRVHDLHAAFFDPGVKAILTTLGGFNSNQLLRYLDYEKIKRHPKILCGYSDITALCNAI
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCEEEECHHHHHHHHHHH
YQKTGLVTYSGPHFSTFAMKKGLDYTEEYFLSCCASDDPFEIHPSSEWSDDRWFLDQENR
HHHCCEEEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEECCCC
RFYPNNGPVVIQEGYAEGTLIGGNLCTLNLLQGTEYFPETEHTILLIEDDYMSDIHMFDR
EECCCCCCEEEECCCCCCEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
DLQSLIHLPAFSHVKAILIGRFQKASNVSIDLVKAMIETKKELSGIPIIANINAGHTSPI
HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCE
ATFPIGGTCRIEAISGTSRIWIDKH
EEECCCCEEEEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377