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The map label for this gene is glnR

Identifier: 16078808

GI number: 16078808

Start: 1877959

End: 1878366

Strand: Direct

Name: glnR

Synonym: BSU17450

Alternate gene names: 16078808

Gene position: 1877959-1878366 (Clockwise)

Preceding gene: 255767410

Following gene: 16078809

Centisome position: 44.55

GC content: 40.2

Gene sequence:

>408_bases
ATGAGTGATAATATTCGCCGCTCAATGCCTTTATTTCCAATAGGAATTGTCATGCAGTTAACTGAGTTATCAGCAAGACA
AATTCGATATTATGAGGAAAATGGACTGATATTTCCAGCCAGAAGTGAAGGAAATAGACGATTATTTTCATTTCATGATG
TAGATAAACTGTTAGAAATCAAGCACCTGATAGAACAAGGTGTAAACATGGCAGGAATTAAACAGATTCTGGCGAAAGCC
GAAGCCGAGCCAGAACAAAAACAAAACGAGAAGACGAAAAAACCAATGAAACATGATCTGTCCGATGACGAACTGAGACA
GCTCCTGAAAAACGAGCTCATGCAAGCCGGCCGTTTTCAAAGAGGGAATACATTCCGTCAAGGCGACATGTCCCGCTTCT
TTCATTAA

Upstream 100 bases:

>100_bases
AAATTTCTCTGGATTTGATGTTAAGAATCCTTACATCGTATTGACACATAATATAACATCACCTATAATGAAACTAAGTT
AAGAAAAGGAGGAAATTGAG

Downstream 100 bases:

>100_bases
TCCGTTAGCAACTGTTTTGCTATATACATTTACCTTTTAAGAGGAGGAATTTTACCAAATGGCAAAGTACACTAGAGAAG
ATATCGAAAAATTAGTAAAA

Product: nitrogen metabolism transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARSEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKA
EAEPEQKQNEKTKKPMKHDLSDDELRQLLKNELMQAGRFQRGNTFRQGDMSRFFH

Sequences:

>Translated_135_residues
MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARSEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKA
EAEPEQKQNEKTKKPMKHDLSDDELRQLLKNELMQAGRFQRGNTFRQGDMSRFFH
>Mature_134_residues
SDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARSEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKAE
AEPEQKQNEKTKKPMKHDLSDDELRQLLKNELMQAGRFQRGNTFRQGDMSRFFH

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): GLNR_BACSU (P37582)

Other databases:

- EMBL:   M22811
- EMBL:   D00854
- EMBL:   U66480
- EMBL:   AL009126
- PIR:   JT0393
- RefSeq:   NP_389627.1
- ProteinModelPortal:   P37582
- SMR:   P37582
- DIP:   DIP-29671N
- EnsemblBacteria:   EBBACT00000003607
- GeneID:   940070
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17450
- NMPDR:   fig|224308.1.peg.1749
- GenoList:   BSU17450
- GeneTree:   EBGT00050000001525
- HOGENOM:   HBG710951
- OMA:   DLARFFH
- ProtClustDB:   CLSK2460924
- BioCyc:   BSUB:BSU17450-MONOMER
- InterPro:   IPR009061
- InterPro:   IPR000551
- SMART:   SM00422

Pfam domain/function: PF00376 MerR; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 15833; Mature: 15701

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00552 HTH_MERR_1; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARSEGNRRLFSFHDVDKLLEI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEECHHHHHHHHHH
KHLIEQGVNMAGIKQILAKAEAEPEQKQNEKTKKPMKHDLSDDELRQLLKNELMQAGRFQ
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHCCCC
RGNTFRQGDMSRFFH
CCCCCCCCCHHHCCC
>Mature Secondary Structure 
SDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARSEGNRRLFSFHDVDKLLEI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEECHHHHHHHHHH
KHLIEQGVNMAGIKQILAKAEAEPEQKQNEKTKKPMKHDLSDDELRQLLKNELMQAGRFQ
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHCCCC
RGNTFRQGDMSRFFH
CCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377