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The map label for this gene is ynbB

Identifier: 255767410

GI number: 255767410

Start: 1876584

End: 1877849

Strand: Direct

Name: ynbB

Synonym: BSU17440

Alternate gene names: 255767410

Gene position: 1876584-1877849 (Clockwise)

Preceding gene: 255767409

Following gene: 16078808

Centisome position: 44.52

GC content: 45.97

Gene sequence:

>1266_bases
ATGTTTGACACATTAACACACGGAGAATTATTGAAGAAAACGGCAATGGAAGTGGAAGCGGACATTGCCGGCATTCATAA
ACAAATAGAAGAAATCAGCGAGCGAAATGAGTGGAGAGTGCTTCAAAGCTATAGAAAACACAAAGTAAGCGACACTCATT
TCACGCCGTCTACTGGATACGGCTATGATGATATCGGAAGAGACACGCTTGAAAGCATATATGCGGATGTGTTTGGCGGA
GAAGCGGGGCTTGTAAGGCCGCAAATCATTTCAGGCACACATGCCATCTCAATTGCTTTGTTCGGTGTCCTCAGACCGGG
GGACGAGCTCCTTTATATCACGGGCAAGCCGTATGATACGCTAGAGGAAATTGTGGGCGTCAGGGGTGGAGAAAACGCTG
GTTCGTTAAAGGATTTTCAAATCGGCTATAATGCGGTTGATCTGACGAAAGACGGAAAGATAGACTATGATGCAGTCGCC
GCTGCGATCAATCCGAAGACAAAAGTAATCGGCATTCAGCGCTCAAAAGGATATGCGAATCGCCCTTCTTTCTTAATTAG
TGAAATAAAAGAAATGATCCGTTTTGTAAAAGAAATCAATGAAAATCTGATCGTCTTTGTGGACAACTGTTACGGAGAAT
TTGTGGAAGAGCTTGAGCCTTGCCATGTCGGAGCCGACCTGATGGCGGGATCTCTCATTAAAAATCCCGGCGGCGGCCTT
GCGAAAACAGGCGGCTACCTCGTCGGAAAAGCGAAATGGATTGAAGCTTGCTCATACCGTATGACGTCACCCGGCATCGG
CAGAGAAGCGGGGGCATCTCTTTACTCGCTCCAAGAAATGTACCAAGGCTTCTTTTTGGCGCCTCACGTTGTGTCTCAAA
GTTTAAAGGGAGCGGTGTTTACAGCGAGATTCCTTGAAAAACTCGGCTTCACTTCAAACCCGAAATGGGATGCGAAAAGA
ACGGATTTAATACAATCCGTTGAGTTTTCTGACAGAGAAAAGATGATTGCTTTTTGCCAGGCTATTCAATTTGCATCGCC
AATCAATGCTCATGTGACGCCTTATCCAGCCTACATGCCTGGATACGAGGATGATGTCATTATGGCAGCAGGGACGTTTA
TTCAAGGAGCAAGCATCGAATTATCAGCTGATGGCCCTATCCGCCCGCCGTATGTAGCGTATGTTCAGGGAGGATTAACC
TATTCGCATGTGAAGAATGCCATATGCAGTGCAGTGGATTCATTGATGCAAAAGCAATTAATTTAA

Upstream 100 bases:

>100_bases
ATGAAGAAAATGAACAGTATGACATATCCGGCTATGTCCAAGAAGAGCAAAGTATCATCGGTGAATTAAAGAAGTATATG
TAGGAAGGAAATATAAAGAC

Downstream 100 bases:

>100_bases
ATTTTTTAAAAATTTCTCTGGATTTGATGTTAAGAATCCTTACATCGTATTGACACATAATATAACATCACCTATAATGA
AACTAAGTTAAGAAAAGGAG

Product: C-S lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MFDTLTHGELLKKTAMEVEADIAGIHKQIEEISERNEWRVLQSYRKHKVSDTHFTPSTGYGYDDIGRDTLESIYADVFGG
EAGLVRPQIISGTHAISIALFGVLRPGDELLYITGKPYDTLEEIVGVRGGENAGSLKDFQIGYNAVDLTKDGKIDYDAVA
AAINPKTKVIGIQRSKGYANRPSFLISEIKEMIRFVKEINENLIVFVDNCYGEFVEELEPCHVGADLMAGSLIKNPGGGL
AKTGGYLVGKAKWIEACSYRMTSPGIGREAGASLYSLQEMYQGFFLAPHVVSQSLKGAVFTARFLEKLGFTSNPKWDAKR
TDLIQSVEFSDREKMIAFCQAIQFASPINAHVTPYPAYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLT
YSHVKNAICSAVDSLMQKQLI

Sequences:

>Translated_421_residues
MFDTLTHGELLKKTAMEVEADIAGIHKQIEEISERNEWRVLQSYRKHKVSDTHFTPSTGYGYDDIGRDTLESIYADVFGG
EAGLVRPQIISGTHAISIALFGVLRPGDELLYITGKPYDTLEEIVGVRGGENAGSLKDFQIGYNAVDLTKDGKIDYDAVA
AAINPKTKVIGIQRSKGYANRPSFLISEIKEMIRFVKEINENLIVFVDNCYGEFVEELEPCHVGADLMAGSLIKNPGGGL
AKTGGYLVGKAKWIEACSYRMTSPGIGREAGASLYSLQEMYQGFFLAPHVVSQSLKGAVFTARFLEKLGFTSNPKWDAKR
TDLIQSVEFSDREKMIAFCQAIQFASPINAHVTPYPAYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLT
YSHVKNAICSAVDSLMQKQLI
>Mature_421_residues
MFDTLTHGELLKKTAMEVEADIAGIHKQIEEISERNEWRVLQSYRKHKVSDTHFTPSTGYGYDDIGRDTLESIYADVFGG
EAGLVRPQIISGTHAISIALFGVLRPGDELLYITGKPYDTLEEIVGVRGGENAGSLKDFQIGYNAVDLTKDGKIDYDAVA
AAINPKTKVIGIQRSKGYANRPSFLISEIKEMIRFVKEINENLIVFVDNCYGEFVEELEPCHVGADLMAGSLIKNPGGGL
AKTGGYLVGKAKWIEACSYRMTSPGIGREAGASLYSLQEMYQGFFLAPHVVSQSLKGAVFTARFLEKLGFTSNPKWDAKR
TDLIQSVEFSDREKMIAFCQAIQFASPINAHVTPYPAYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLT
YSHVKNAICSAVDSLMQKQLI

Specific function: Unknown

COG id: COG4100

COG function: function code P; Cystathionine beta-lyase family protein involved in aluminum resistance

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNBB_BACSU (P94479)

Other databases:

- EMBL:   U66480
- EMBL:   AL009126
- PIR:   C69888
- RefSeq:   NP_389626.2
- ProteinModelPortal:   P94479
- SMR:   P94479
- EnsemblBacteria:   EBBACT00000002703
- GeneID:   940047
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17440
- NMPDR:   fig|224308.1.peg.1748
- GenoList:   BSU17440
- GeneTree:   EBGT00050000001364
- HOGENOM:   HBG284437
- ProtClustDB:   CLSK873299
- BioCyc:   BSUB:BSU17440-MONOMER
- InterPro:   IPR009651
- InterPro:   IPR015424
- InterPro:   IPR015421
- Gene3D:   G3DSA:3.40.640.10

Pfam domain/function: PF06838 Alum_res; SSF53383 PyrdxlP-dep_Trfase_major

EC number: NA

Molecular weight: Translated: 46173; Mature: 46173

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTLTHGELLKKTAMEVEADIAGIHKQIEEISERNEWRVLQSYRKHKVSDTHFTPSTGY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC
GYDDIGRDTLESIYADVFGGEAGLVRPQIISGTHAISIALFGVLRPGDELLYITGKPYDT
CCHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHEEHHHHHHCCCCCCEEEEECCCHHH
LEEIVGVRGGENAGSLKDFQIGYNAVDLTKDGKIDYDAVAAAINPKTKVIGIQRSKGYAN
HHHHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEECCCCCCC
RPSFLISEIKEMIRFVKEINENLIVFVDNCYGEFVEELEPCHVGADLMAGSLIKNPGGGL
CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCHHCCHHHHHHHHHCCCCCCC
AKTGGYLVGKAKWIEACSYRMTSPGIGREAGASLYSLQEMYQGFFLAPHVVSQSLKGAVF
CCCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHH
TARFLEKLGFTSNPKWDAKRTDLIQSVEFSDREKMIAFCQAIQFASPINAHVTPYPAYMP
HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLTYSHVKNAICSAVDSLMQKQL
CCCCCEEEEECCEEECCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure
MFDTLTHGELLKKTAMEVEADIAGIHKQIEEISERNEWRVLQSYRKHKVSDTHFTPSTGY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC
GYDDIGRDTLESIYADVFGGEAGLVRPQIISGTHAISIALFGVLRPGDELLYITGKPYDT
CCHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHEEHHHHHHCCCCCCEEEEECCCHHH
LEEIVGVRGGENAGSLKDFQIGYNAVDLTKDGKIDYDAVAAAINPKTKVIGIQRSKGYAN
HHHHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEECCCCCCC
RPSFLISEIKEMIRFVKEINENLIVFVDNCYGEFVEELEPCHVGADLMAGSLIKNPGGGL
CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCHHCCHHHHHHHHHCCCCCCC
AKTGGYLVGKAKWIEACSYRMTSPGIGREAGASLYSLQEMYQGFFLAPHVVSQSLKGAVF
CCCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHH
TARFLEKLGFTSNPKWDAKRTDLIQSVEFSDREKMIAFCQAIQFASPINAHVTPYPAYMP
HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLTYSHVKNAICSAVDSLMQKQL
CCCCCEEEEECCEEECCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377