Click here to switch to the map view.

The map label for this gene is ymfC

Identifier: 16078744

GI number: 16078744

Start: 1754785

End: 1755510

Strand: Direct

Name: ymfC

Synonym: BSU16810

Alternate gene names: 16078744

Gene position: 1754785-1755510 (Clockwise)

Preceding gene: 255767381

Following gene: 255767382

Centisome position: 41.63

GC content: 40.08

Gene sequence:

>726_bases
ATGTCTACAAAAGCTGATAATCGGCACTTGTATTTGAAAGTAATTGAACGAATTAAAGAGGATATAAAAAATGGGATCTA
CACTGAGAAGGAAAAGCTGCCTTCTGAATTTGAGCTTTCCAAAAAGCTTGGTGTCAGCAGAGCGACGCTAAGAGAAGCCT
TGCGGATACTGGAAGAAGAGCATGTGATTATCAGAAGGCATGGTGTAGGCACTTTTGTCCATTCTAAGCCGTTATTTCTT
TCGGGTATTGAACAGCTGAACAGTGTAACCAAGATGATAGAACAGGCGAATATGACCCCTGGCACGATTTTTCTATCATC
ACAAGTGCTTATGCCGTCTGAAGATGATACGAAGAGATTTCACTTGGCAGAAGGGCAAGAACTTTTTTACCTTGAACGAG
TCAGGACAGCTGACGGACAGCCGATTGTGTATTGTATAGACAAAATTCCGATGAATATTTTGCCGAATTCTTTTTCTCAT
CAGCAAGAATCTATGTTTGACCTGCTAGAGAAAAATTCAGGCTCCGTAATCAGCTATGCAGTAACTGATATAGAACCGAT
CGGCTATCACGATACCATTTCTCCAGTGCTTGAATGCGATCCGGAAACAGCTCTTTTGCTGTTAAAACAAACCCATTACG
ATCAGCACGATAAACCGGTGCTTTATTCTTTAAATTATTTTAGAGCGGATAAATTCAGATTTCATGTTTTGCGTAAACGA
TTCTAA

Upstream 100 bases:

>100_bases
GTAAACTGATCACCTTTCTATTTATTTTTTCGACAAAACATGATATAGTTGTCCCAATTGTTCAATAATTTTTATCGAAA
GTGGTTTACGGAGGGGAAAC

Downstream 100 bases:

>100_bases
AAACGGACGCCTGTATGTGTCTGTTTTTTTATTTGCACTGATTCATGTTTCTTTGTACATACTTTCATTCCGGTTAACGC
AATATATAAGGGATGACAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSTKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATLREALRILEEEHVIIRRHGVGTFVHSKPLFL
SGIEQLNSVTKMIEQANMTPGTIFLSSQVLMPSEDDTKRFHLAEGQELFYLERVRTADGQPIVYCIDKIPMNILPNSFSH
QQESMFDLLEKNSGSVISYAVTDIEPIGYHDTISPVLECDPETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKR
F

Sequences:

>Translated_241_residues
MSTKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATLREALRILEEEHVIIRRHGVGTFVHSKPLFL
SGIEQLNSVTKMIEQANMTPGTIFLSSQVLMPSEDDTKRFHLAEGQELFYLERVRTADGQPIVYCIDKIPMNILPNSFSH
QQESMFDLLEKNSGSVISYAVTDIEPIGYHDTISPVLECDPETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKR
F
>Mature_240_residues
STKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATLREALRILEEEHVIIRRHGVGTFVHSKPLFLS
GIEQLNSVTKMIEQANMTPGTIFLSSQVLMPSEDDTKRFHLAEGQELFYLERVRTADGQPIVYCIDKIPMNILPNSFSHQ
QESMFDLLEKNSGSVISYAVTDIEPIGYHDTISPVLECDPETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKRF

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788418, Length=240, Percent_Identity=25.8333333333333, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87082252, Length=241, Percent_Identity=26.5560165975104, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790118, Length=237, Percent_Identity=24.0506329113924, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=23.7068965517241, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YMFC_BACSU (O31761)

Other databases:

- EMBL:   AL009126
- PIR:   B69885
- RefSeq:   NP_389563.1
- ProteinModelPortal:   O31761
- SMR:   O31761
- EnsemblBacteria:   EBBACT00000002547
- GeneID:   940138
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16810
- NMPDR:   fig|224308.1.peg.1684
- GenoList:   BSU16810
- GeneTree:   EBGT00070000032122
- HOGENOM:   HBG312507
- OMA:   LITEQVL
- PhylomeDB:   O31761
- ProtClustDB:   CLSK2484785
- BioCyc:   BSUB:BSU16810-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00035
- SMART:   SM00345
- SMART:   SM00866

Pfam domain/function: PF00392 GntR; PF07702 UTRA

EC number: NA

Molecular weight: Translated: 27897; Mature: 27766

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATLREALRILEEE
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHC
HVIIRRHGVGTFVHSKPLFLSGIEQLNSVTKMIEQANMTPGTIFLSSQVLMPSEDDTKRF
CEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEEECCCCCCCCEE
HLAEGQELFYLERVRTADGQPIVYCIDKIPMNILPNSFSHQQESMFDLLEKNSGSVISYA
EECCCCCEEEHHHHHCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE
VTDIEPIGYHDTISPVLECDPETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKR
EECCCCCCCCCCCCHHHHCCCCHHEEEEHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHC
F
C
>Mature Secondary Structure 
STKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATLREALRILEEE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHC
HVIIRRHGVGTFVHSKPLFLSGIEQLNSVTKMIEQANMTPGTIFLSSQVLMPSEDDTKRF
CEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEEECCCCCCCCEE
HLAEGQELFYLERVRTADGQPIVYCIDKIPMNILPNSFSHQQESMFDLLEKNSGSVISYA
EECCCCCEEEHHHHHCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE
VTDIEPIGYHDTISPVLECDPETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKR
EECCCCCCCCCCCCHHHHCCCCHHEEEEHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377