Click here to switch to the map view.

The map label for this gene is ylmC

Identifier: 16078600

GI number: 16078600

Start: 1608919

End: 1609164

Strand: Direct

Name: ylmC

Synonym: BSU15360

Alternate gene names: 16078600

Gene position: 1608919-1609164 (Clockwise)

Preceding gene: 255767356

Following gene: 16078601

Centisome position: 38.17

GC content: 38.62

Gene sequence:

>246_bases
ATGATCAGCATTTCAGAATTTCAGGTAAAGGATGTCGTCAATGTCTCAAACGGAAAAAAGCTGGGGAGTATTGGTGATAT
TGATATCAATGTGACCACTGGAAAAATTCAGGCGATCATACTCGGAGGAAATGGGAAAGTTCTCGGATTTTTTGGAAAAG
AAGAGGAATTGGTCATTCCATGGCGAAATATAGTAAAAATCGGGGAAGATGTAATCTTAGTCCGATTAAGTGAACCACAT
GCATAA

Upstream 100 bases:

>100_bases
CGGAAAAAAGAACAATGACATGAAAATTTCTTCTTGCTGACAAGGTTCAGCCTGCCCGTTCATATACTTGAACAAAAGGA
CGGAAAAAGGACGTGATGGA

Downstream 100 bases:

>100_bases
ACCTGCTTGTCTGCCGCAGATTGGCAAATGCCGGAAGTCTCGATTCTTCCGGCACATTTCATTTAGAAATATGCAAATCG
GCGCTCAACGAATGCAGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MISISEFQVKDVVNVSNGKKLGSIGDIDINVTTGKIQAIILGGNGKVLGFFGKEEELVIPWRNIVKIGEDVILVRLSEPH
A

Sequences:

>Translated_81_residues
MISISEFQVKDVVNVSNGKKLGSIGDIDINVTTGKIQAIILGGNGKVLGFFGKEEELVIPWRNIVKIGEDVILVRLSEPH
A
>Mature_81_residues
MISISEFQVKDVVNVSNGKKLGSIGDIDINVTTGKIQAIILGGNGKVLGFFGKEEELVIPWRNIVKIGEDVILVRLSEPH
A

Specific function: Unknown

COG id: COG1873

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ylmC/ymxH family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLMC_BACSU (O31725)

Other databases:

- EMBL:   AL009126
- PIR:   C69876
- RefSeq:   NP_389419.1
- ProteinModelPortal:   O31725
- SMR:   O31725
- EnsemblBacteria:   EBBACT00000004083
- GeneID:   939682
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15360
- NMPDR:   fig|224308.1.peg.1538
- GenoList:   BSU15360
- GeneTree:   EBGT00050000001947
- HOGENOM:   HBG485934
- OMA:   KRLGNIG
- ProtClustDB:   CLSK887272
- BioCyc:   BSUB:BSU15360-MONOMER
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR014238
- TIGRFAMs:   TIGR02888

Pfam domain/function: PF05239 PRC; SSF50346 PRCH_cytoplasmic

EC number: NA

Molecular weight: Translated: 8758; Mature: 8758

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISISEFQVKDVVNVSNGKKLGSIGDIDINVTTGKIQAIILGGNGKVLGFFGKEEELVIP
CCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEEEECCCCEEEEC
WRNIVKIGEDVILVRLSEPHA
CHHHEECCCEEEEEEECCCCC
>Mature Secondary Structure
MISISEFQVKDVVNVSNGKKLGSIGDIDINVTTGKIQAIILGGNGKVLGFFGKEEELVIP
CCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEEEECCCCEEEEC
WRNIVKIGEDVILVRLSEPHA
CHHHEECCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377