Click here to switch to the map view.

The map label for this gene is ylmD

Identifier: 16078601

GI number: 16078601

Start: 1609327

End: 1610163

Strand: Direct

Name: ylmD

Synonym: BSU15370

Alternate gene names: 16078601

Gene position: 1609327-1610163 (Clockwise)

Preceding gene: 16078600

Following gene: 16078602

Centisome position: 38.18

GC content: 45.76

Gene sequence:

>837_bases
ATGAATACATATCACCCATTCAGTCTTACCACACCCTCGACACTCATGATACAAGACTGGGCTCAAACGAATCAAAACAA
CAAAGAGGTCATTGCCGGATTTACGACAAAAAACGGCGGTGTCAGCCAAAAGCCTTTTGAATCGTTAAATACAGGATTGC
ACGTTCATGACAAAGATGCAGATGTAGTTAAAAATCGTGAATATATTGCCGATATGTTTAATACTGATTTGCAGTCTTGG
GTATTCGCTGATCAGACACATGATAATCGCGTTCAGAAAGTGACGCAGAGGGATAGGGGAAAAGGCGCCCGTGAGTATCA
CACGGCTCTAAAAGCAACGGACGGGATCTATACAAATGAAAAAAATGTATTTTTAGCATTATGCTTTGCTGATTGTGTGC
CTCTTTTCTTTTATGATCCGGTTAAGTCGCTTGTCGGAGTCGCCCATGCCGGGTGGAAAGGCACCGTCAAACAGATTGGC
AGAGAAATGGTGAAGCAATGGACTGAGAAGGAAGGTTCAAATCCCTCAGATATTTACGCTGTTATTGGCCCGTCTATCAG
CGGAGCATGCTATACGGTAGACGACCGCGTCATGGATGCTGTCCGCGCATTGCCGGTTTCAGCAGACCTTGCCGCCAATC
AGACGGCAAAGGCACAATATCAGCTTGATCTGAAAGAGCTGAACCGTCTTATACTGATGGACAGCGGTTTGGCAAGTGAA
CAAATTTCTGTCAGCGGTTTATGCACGGAAAGCGAGCCGTCTCTTTTCTATTCTCATCGCCGCGATCAGGGGAAAACTGG
ACGGATGATGTCCTTTATCGGAATGAAGGAGGCATAA

Upstream 100 bases:

>100_bases
TTAGAAATATGCAAATCGGCGCTCAACGAATGCAGTAAGATGTGGTAAAATAAGTGGGAAATTCCGCTTTTTTAAATGTT
TGTCGAAAGGTTGGATCATC

Downstream 100 bases:

>100_bases
AAGATCTTGCGTGTTGTTGATAATTTACGACATATAAACGAACGAATAAACGAAGCATGTAACAGATCGGGCCGCAGCTC
CGATGAAGTTACGGTTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNTYHPFSLTTPSTLMIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESLNTGLHVHDKDADVVKNREYIADMFNTDLQSW
VFADQTHDNRVQKVTQRDRGKGAREYHTALKATDGIYTNEKNVFLALCFADCVPLFFYDPVKSLVGVAHAGWKGTVKQIG
REMVKQWTEKEGSNPSDIYAVIGPSISGACYTVDDRVMDAVRALPVSADLAANQTAKAQYQLDLKELNRLILMDSGLASE
QISVSGLCTESEPSLFYSHRRDQGKTGRMMSFIGMKEA

Sequences:

>Translated_278_residues
MNTYHPFSLTTPSTLMIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESLNTGLHVHDKDADVVKNREYIADMFNTDLQSW
VFADQTHDNRVQKVTQRDRGKGAREYHTALKATDGIYTNEKNVFLALCFADCVPLFFYDPVKSLVGVAHAGWKGTVKQIG
REMVKQWTEKEGSNPSDIYAVIGPSISGACYTVDDRVMDAVRALPVSADLAANQTAKAQYQLDLKELNRLILMDSGLASE
QISVSGLCTESEPSLFYSHRRDQGKTGRMMSFIGMKEA
>Mature_278_residues
MNTYHPFSLTTPSTLMIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESLNTGLHVHDKDADVVKNREYIADMFNTDLQSW
VFADQTHDNRVQKVTQRDRGKGAREYHTALKATDGIYTNEKNVFLALCFADCVPLFFYDPVKSLVGVAHAGWKGTVKQIG
REMVKQWTEKEGSNPSDIYAVIGPSISGACYTVDDRVMDAVRALPVSADLAANQTAKAQYQLDLKELNRLILMDSGLASE
QISVSGLCTESEPSLFYSHRRDQGKTGRMMSFIGMKEA

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family

Homologues:

Organism=Homo sapiens, GI190194374, Length=255, Percent_Identity=30.1960784313725, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI190194372, Length=255, Percent_Identity=30.1960784313725, Blast_Score=112, Evalue=4e-25,
Organism=Escherichia coli, GI1788945, Length=261, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLMD_BACSU (O31726)

Other databases:

- EMBL:   AL009126
- PIR:   D69876
- RefSeq:   NP_389420.1
- ProteinModelPortal:   O31726
- SMR:   O31726
- EnsemblBacteria:   EBBACT00000002456
- GeneID:   939954
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15370
- NMPDR:   fig|224308.1.peg.1539
- GenoList:   BSU15370
- GeneTree:   EBGT00050000001048
- HOGENOM:   HBG751647
- OMA:   CFADCVP
- PhylomeDB:   O31726
- ProtClustDB:   CLSK887273
- BioCyc:   BSUB:BSU15370-MONOMER
- InterPro:   IPR003730
- InterPro:   IPR011324
- Gene3D:   G3DSA:3.60.140.10
- TIGRFAMs:   TIGR00726

Pfam domain/function: PF02578 Cu-oxidase_4; SSF64438 Cytotoxic_necrot_fac-like_cat

EC number: NA

Molecular weight: Translated: 30944; Mature: 30944

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTYHPFSLTTPSTLMIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESLNTGLHVHDKDA
CCCCCCCEECCCCEEEEEEHHHCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCEEECCCH
DVVKNREYIADMFNTDLQSWVFADQTHDNRVQKVTQRDRGKGAREYHTALKATDGIYTNE
HHHHHHHHHHHHHHCHHHHHEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECC
KNVFLALCFADCVPLFFYDPVKSLVGVAHAGWKGTVKQIGREMVKQWTEKEGSNPSDIYA
CCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
VIGPSISGACYTVDDRVMDAVRALPVSADLAANQTAKAQYQLDLKELNRLILMDSGLASE
EECCCCCCEEEEEHHHHHHHHHHCCCCCHHCCCCCCCHHEEEEHHHCCEEEEECCCCCCC
QISVSGLCTESEPSLFYSHRRDQGKTGRMMSFIGMKEA
CEEEEEECCCCCCCHHHHHCCCCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MNTYHPFSLTTPSTLMIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESLNTGLHVHDKDA
CCCCCCCEECCCCEEEEEEHHHCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCEEECCCH
DVVKNREYIADMFNTDLQSWVFADQTHDNRVQKVTQRDRGKGAREYHTALKATDGIYTNE
HHHHHHHHHHHHHHCHHHHHEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECC
KNVFLALCFADCVPLFFYDPVKSLVGVAHAGWKGTVKQIGREMVKQWTEKEGSNPSDIYA
CCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
VIGPSISGACYTVDDRVMDAVRALPVSADLAANQTAKAQYQLDLKELNRLILMDSGLASE
EECCCCCCEEEEEHHHHHHHHHHCCCCCHHCCCCCCCHHEEEEHHHCCEEEEECCCCCCC
QISVSGLCTESEPSLFYSHRRDQGKTGRMMSFIGMKEA
CEEEEEECCCCCCCHHHHHCCCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377