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The map label for this gene is ylmB

Identifier: 255767356

GI number: 255767356

Start: 1607556

End: 1608836

Strand: Direct

Name: ylmB

Synonym: BSU15350

Alternate gene names: 255767356

Gene position: 1607556-1608836 (Clockwise)

Preceding gene: 255767355

Following gene: 16078600

Centisome position: 38.13

GC content: 45.43

Gene sequence:

>1281_bases
TTGGATCAACAAATATACTCTTTGCAAAAAAAAGTGGAAGAACATAAGGAGGAGCTTATTCAGCTTGCGAAAACGCTGAT
TTCTTATCAAACACCTGCTCCGCCTGCAAGAAATACAGAGGGCATTCAGTCTTGGATTGCGGGATATTTAAATGAATTGG
GATTCTCGATCGACAAATGGGATGTGTACCCTGGAGATCCCAATGTTGTAGGGAAGCTAAAAGGAACAGATTCAGCAGAT
TATTATAGCCTGATTATCAATGGCCATGTAGATGTGGCAGAGGTAAAAGAGGATGAAGAATGGAAGCACGATCCGTTTCA
TCCCATTGAAAAAAACGGTCTCTTAATCGGGCGAGGCGCTTCCGATATGAAGGGCGGAATGGCTTGTGTGCTGTTTGCTG
TCAAATTAATTCGTGAAGCAAGCATTGAACTTCCAGGTGATCTGATTCTGCAATCGGTTATTGGGGAGGAAGTTGGAGAG
GCCGGCACACTTGAATGCTGCAAGAGGGGCTACCACGCTGATTTTGCAATTGTCGCGGATACGAGCGATATGCATATTCA
AGGCCAAGGCGGTGTCATTACAGGCTGGATCGAAATCAAAAGCAGTCAAACATTTCATGATGGAACGAGACGGAATATGA
TTCATGCAGGCGGAGGAACATTCGGAGCAAGCGCAATTGAAAAAATGGCAAAAATCATTGCGGGGCTCGGTGAACTTGAG
CGCCACTGGTCTATTATGAAAAGTTATCCCGGTTTTAAACCAGGCACAAATACGATTAACCCGGCAGTTATAGAAGGCGG
CAGACATGCGGCTTTTATAGCGGACGAATGCCGGCTGTGGATCACAGTCCATTTTTATCCGAATGAAACCCATGACCAAG
TGGCAGCGGAAATAGAAGATTACGTCAATCGGCTGAGTGACAGTGATATTTGGCTTAGGGAAAACCGCCCTGTATTCAAG
TGGGGAGGCTCATCTATGATAGAAGACAGGGGAGAAATTTTTCCGGCATTGGAAGTTGACCCTGGCCACCCAGGCGTCTT
AGCGCTAACTGCCTCTCATCAGAAAGTGAAACGGGAGTGTCCAATTATTGACGTTTCTCAATCAGTTACAGATGGCGGAT
GGCTGTATGATGCCGGTATTCCATGCGTAATATACGGTCCTGGAGATCTGCACAATGCACACTCTGTGAACGAGAAGGTA
TCGATTGAGCAGCTAGTAGAGTATACAAAAATTATACTCGATTTTATCATCAGCTGGTGCAGCCGGAAAAAAGAACAATG
A

Upstream 100 bases:

>100_bases
GTGAAAAGCGGAGTACATCGGACTCCGTTTGTTTTTATTAAGCCGTTTCATCACATTTGAAACGGCTTTTTTGATTTTAA
AGAATAGGAGCGGATTTACA

Downstream 100 bases:

>100_bases
CATGAAAATTTCTTCTTGCTGACAAGGTTCAGCCTGCCCGTTCATATACTTGAACAAAAGGACGGAAAAAGGACGTGATG
GAATGATCAGCATTTCAGAA

Product: acetylornithine deacetylase

Products: NA

Alternate protein names: Amidohydrolase; Formylaminopyrimidine deformylase

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MDQQIYSLQKKVEEHKEELIQLAKTLISYQTPAPPARNTEGIQSWIAGYLNELGFSIDKWDVYPGDPNVVGKLKGTDSAD
YYSLIINGHVDVAEVKEDEEWKHDPFHPIEKNGLLIGRGASDMKGGMACVLFAVKLIREASIELPGDLILQSVIGEEVGE
AGTLECCKRGYHADFAIVADTSDMHIQGQGGVITGWIEIKSSQTFHDGTRRNMIHAGGGTFGASAIEKMAKIIAGLGELE
RHWSIMKSYPGFKPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETHDQVAAEIEDYVNRLSDSDIWLRENRPVFK
WGGSSMIEDRGEIFPALEVDPGHPGVLALTASHQKVKRECPIIDVSQSVTDGGWLYDAGIPCVIYGPGDLHNAHSVNEKV
SIEQLVEYTKIILDFIISWCSRKKEQ

Sequences:

>Translated_426_residues
MDQQIYSLQKKVEEHKEELIQLAKTLISYQTPAPPARNTEGIQSWIAGYLNELGFSIDKWDVYPGDPNVVGKLKGTDSAD
YYSLIINGHVDVAEVKEDEEWKHDPFHPIEKNGLLIGRGASDMKGGMACVLFAVKLIREASIELPGDLILQSVIGEEVGE
AGTLECCKRGYHADFAIVADTSDMHIQGQGGVITGWIEIKSSQTFHDGTRRNMIHAGGGTFGASAIEKMAKIIAGLGELE
RHWSIMKSYPGFKPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETHDQVAAEIEDYVNRLSDSDIWLRENRPVFK
WGGSSMIEDRGEIFPALEVDPGHPGVLALTASHQKVKRECPIIDVSQSVTDGGWLYDAGIPCVIYGPGDLHNAHSVNEKV
SIEQLVEYTKIILDFIISWCSRKKEQ
>Mature_426_residues
MDQQIYSLQKKVEEHKEELIQLAKTLISYQTPAPPARNTEGIQSWIAGYLNELGFSIDKWDVYPGDPNVVGKLKGTDSAD
YYSLIINGHVDVAEVKEDEEWKHDPFHPIEKNGLLIGRGASDMKGGMACVLFAVKLIREASIELPGDLILQSVIGEEVGE
AGTLECCKRGYHADFAIVADTSDMHIQGQGGVITGWIEIKSSQTFHDGTRRNMIHAGGGTFGASAIEKMAKIIAGLGELE
RHWSIMKSYPGFKPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETHDQVAAEIEDYVNRLSDSDIWLRENRPVFK
WGGSSMIEDRGEIFPALEVDPGHPGVLALTASHQKVKRECPIIDVSQSVTDGGWLYDAGIPCVIYGPGDLHNAHSVNEKV
SIEQLVEYTKIILDFIISWCSRKKEQ

Specific function: Catalyzed the deformylation of formylaminopyrimidine to give aminopyrimidine

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family

Homologues:

Organism=Escherichia coli, GI1789236, Length=343, Percent_Identity=24.7813411078717, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1790395, Length=382, Percent_Identity=22.5130890052356, Blast_Score=82, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193211059, Length=155, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FAPD_BACSU (O31724)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389418.2
- ProteinModelPortal:   O31724
- SMR:   O31724
- EnsemblBacteria:   EBBACT00000000548
- GeneID:   940116
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15350
- GenoList:   BSU15350
- GeneTree:   EBGT00050000000945
- HOGENOM:   HBG498131
- ProtClustDB:   PRK08596
- BioCyc:   BSUB:BSU15350-MONOMER
- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650
- TIGRFAMs:   TIGR01910

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer

EC number: NA

Molecular weight: Translated: 47154; Mature: 47154

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00758 ARGE_DAPE_CPG2_1; PS00759 ARGE_DAPE_CPG2_2

Important sites: ACT_SITE 91-91 ACT_SITE 156-156

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQQIYSLQKKVEEHKEELIQLAKTLISYQTPAPPARNTEGIQSWIAGYLNELGFSIDKW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
DVYPGDPNVVGKLKGTDSADYYSLIINGHVDVAEVKEDEEWKHDPFHPIEKNGLLIGRGA
ECCCCCCCEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCEEEECCC
SDMKGGMACVLFAVKLIREASIELPGDLILQSVIGEEVGEAGTLECCKRGYHADFAIVAD
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEC
TSDMHIQGQGGVITGWIEIKSSQTFHDGTRRNMIHAGGGTFGASAIEKMAKIIAGLGELE
CCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
RHWSIMKSYPGFKPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETHDQVAAEIED
HHHHHHHHCCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHH
YVNRLSDSDIWLRENRPVFKWGGSSMIEDRGEIFPALEVDPGHPGVLALTASHQKVKREC
HHHHCCCCCEEEECCCCEEEECCCHHHHCCCCCCCEEEECCCCCCEEEEECCHHHHHHCC
PIIDVSQSVTDGGWLYDAGIPCVIYGPGDLHNAHSVNEKVSIEQLVEYTKIILDFIISWC
CEEECCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SRKKEQ
HHCCCC
>Mature Secondary Structure
MDQQIYSLQKKVEEHKEELIQLAKTLISYQTPAPPARNTEGIQSWIAGYLNELGFSIDKW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
DVYPGDPNVVGKLKGTDSADYYSLIINGHVDVAEVKEDEEWKHDPFHPIEKNGLLIGRGA
ECCCCCCCEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCEEEECCC
SDMKGGMACVLFAVKLIREASIELPGDLILQSVIGEEVGEAGTLECCKRGYHADFAIVAD
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEC
TSDMHIQGQGGVITGWIEIKSSQTFHDGTRRNMIHAGGGTFGASAIEKMAKIIAGLGELE
CCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
RHWSIMKSYPGFKPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETHDQVAAEIED
HHHHHHHHCCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHH
YVNRLSDSDIWLRENRPVFKWGGSSMIEDRGEIFPALEVDPGHPGVLALTASHQKVKREC
HHHHCCCCCEEEECCCCEEEECCCHHHHCCCCCCCEEEECCCCCCEEEEECCHHHHHHCC
PIIDVSQSVTDGGWLYDAGIPCVIYGPGDLHNAHSVNEKVSIEQLVEYTKIILDFIISWC
CEEECCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SRKKEQ
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377