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The map label for this gene is xkdT

Identifier: 16078338

GI number: 16078338

Start: 1341350

End: 1342396

Strand: Direct

Name: xkdT

Synonym: BSU12730

Alternate gene names: 16078338

Gene position: 1341350-1342396 (Clockwise)

Preceding gene: 16078337

Following gene: 16078339

Centisome position: 31.82

GC content: 47.37

Gene sequence:

>1047_bases
ATGTTTGAAGATCAGACTTTTGAAGCGATTATGGAGCGTATGCTGAACAGCATTTCCGCAGATATTGACACAAGAGAAGG
CAGCGTCATTTATAATGCGTTAGCCCCGGCGGCGGCCGAGCTTGCGAAGTCTTATATATGGCTGGATACTGTGCTTGAGC
TAGTTTTTTCTGATACCGCACAAGGCGAATTTTTAGACAGGCGTGCAGCGGAAGCGGGAATTGAACGGACAGCCGCGACA
AAGGCGGTCAGAGCGGGAGAGTTTACATCTGGAGTTACTATTCCTGTCGGCTCCCGCTTTTACGTGGATAATCTTTATTT
TCAATATACGGCAGACGGGACGCTCATCTGTGAAACACCTGGTGAAGCGGGAAACGCCAATCTGACCGGACGCAATTTAC
TGTCATTGGATACCATTCCCGGTTTAGAAACGGCCATTGTCAAAGAAATCCTGATTCCGGGGCGCGAGGAAGAGGGAGAT
GACAGCTTGCGAGAACGGTATTTTACAAGGGTTCGGCGTGAGGCCGTCAGTGCCAATAAAATGCATTATAAAGAGTGGGC
TGAGGAAGTGGACGGTGTGGGAAAGGCAAAGATCTTCCCGCTTTGGAACGGTGAAGGCACGGTCAAAATTGTCGTCACCA
ATGCGAATCTTGAGCCCGCTTCTCCTATTTTAATTCAAAAAGTGAAAGATTATATCGACCCTGAACCAGGACAGGGAGAG
GGACAGGCGCCAATCGGAGCCGTTGTCACGGTGGAAAGCGCGGTCTGGAAGGAAGTTGAGATTTCTGCCGAAGTGCTGCC
TGAGATCAATCACTCAATTGATGAAGTGAAGTCGGAAATTGAGGAAGGCGTTTTAAACTTCTTTAAAAAAATGGCGTTTG
AAGACAACGTTATCCGCCTTTCTCAAATTAACAATATCGTCTATAATTCACCATCAGTCAGTGACTACTCCAATATTCAA
ATCAACGGCACGTCTGAAAATCTGGTGCTGAGCGACGTGGAAATTCCTAAGCTTGGGCAGGTGAAGATCATTGAGCAAAC
AAGATGA

Upstream 100 bases:

>100_bases
ACAGATTTTGAGATTGAAAAACAAGGCGACGCGTTTCATGTGTCCTTCGTGGTGGAGACGGATGAAGGAACGCTTGAGAT
TGAGGAGGTGATTGGCGAAG

Downstream 100 bases:

>100_bases
CATGCGAGCTTATCTGCCGCCGTTTCTCACCAGCCTTAAAGAAATGGCCGAGCTGCTGAAAGCGGAAGCGCCTGAGTTTG
ATAAACAAAATGACAGCATA

Product: base plate assembly protein; PBSX prophage protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MFEDQTFEAIMERMLNSISADIDTREGSVIYNALAPAAAELAKSYIWLDTVLELVFSDTAQGEFLDRRAAEAGIERTAAT
KAVRAGEFTSGVTIPVGSRFYVDNLYFQYTADGTLICETPGEAGNANLTGRNLLSLDTIPGLETAIVKEILIPGREEEGD
DSLRERYFTRVRREAVSANKMHYKEWAEEVDGVGKAKIFPLWNGEGTVKIVVTNANLEPASPILIQKVKDYIDPEPGQGE
GQAPIGAVVTVESAVWKEVEISAEVLPEINHSIDEVKSEIEEGVLNFFKKMAFEDNVIRLSQINNIVYNSPSVSDYSNIQ
INGTSENLVLSDVEIPKLGQVKIIEQTR

Sequences:

>Translated_348_residues
MFEDQTFEAIMERMLNSISADIDTREGSVIYNALAPAAAELAKSYIWLDTVLELVFSDTAQGEFLDRRAAEAGIERTAAT
KAVRAGEFTSGVTIPVGSRFYVDNLYFQYTADGTLICETPGEAGNANLTGRNLLSLDTIPGLETAIVKEILIPGREEEGD
DSLRERYFTRVRREAVSANKMHYKEWAEEVDGVGKAKIFPLWNGEGTVKIVVTNANLEPASPILIQKVKDYIDPEPGQGE
GQAPIGAVVTVESAVWKEVEISAEVLPEINHSIDEVKSEIEEGVLNFFKKMAFEDNVIRLSQINNIVYNSPSVSDYSNIQ
INGTSENLVLSDVEIPKLGQVKIIEQTR
>Mature_348_residues
MFEDQTFEAIMERMLNSISADIDTREGSVIYNALAPAAAELAKSYIWLDTVLELVFSDTAQGEFLDRRAAEAGIERTAAT
KAVRAGEFTSGVTIPVGSRFYVDNLYFQYTADGTLICETPGEAGNANLTGRNLLSLDTIPGLETAIVKEILIPGREEEGD
DSLRERYFTRVRREAVSANKMHYKEWAEEVDGVGKAKIFPLWNGEGTVKIVVTNANLEPASPILIQKVKDYIDPEPGQGE
GQAPIGAVVTVESAVWKEVEISAEVLPEINHSIDEVKSEIEEGVLNFFKKMAFEDNVIRLSQINNIVYNSPSVSDYSNIQ
INGTSENLVLSDVEIPKLGQVKIIEQTR

Specific function: Unknown

COG id: COG3299

COG function: function code S; Uncharacterized homolog of phage Mu protein gp47

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mu gp47/PBSX XkdT family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XKDT_BACSU (P54339)

Other databases:

- EMBL:   Z70177
- EMBL:   AL009126
- PIR:   C69733
- RefSeq:   NP_389155.1
- EnsemblBacteria:   EBBACT00000002522
- GeneID:   936475
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12730
- NMPDR:   fig|224308.1.peg.1274
- GenoList:   BSU12730
- GeneTree:   EBGT00050000006414
- HOGENOM:   HBG421342
- OMA:   YELECEV
- ProtClustDB:   CLSK887136
- BioCyc:   BSUB:BSU12730-MONOMER
- InterPro:   IPR006949

Pfam domain/function: PF04865 Baseplate_J

EC number: NA

Molecular weight: Translated: 38369; Mature: 38369

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEDQTFEAIMERMLNSISADIDTREGSVIYNALAPAAAELAKSYIWLDTVLELVFSDTA
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QGEFLDRRAAEAGIERTAATKAVRAGEFTSGVTIPVGSRFYVDNLYFQYTADGTLICETP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECEEEEEECCCEEEEECC
GEAGNANLTGRNLLSLDTIPGLETAIVKEILIPGREEEGDDSLRERYFTRVRREAVSANK
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCH
MHYKEWAEEVDGVGKAKIFPLWNGEGTVKIVVTNANLEPASPILIQKVKDYIDPEPGQGE
HHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCC
GQAPIGAVVTVESAVWKEVEISAEVLPEINHSIDEVKSEIEEGVLNFFKKMAFEDNVIRL
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEH
SQINNIVYNSPSVSDYSNIQINGTSENLVLSDVEIPKLGQVKIIEQTR
HHHCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEECCC
>Mature Secondary Structure
MFEDQTFEAIMERMLNSISADIDTREGSVIYNALAPAAAELAKSYIWLDTVLELVFSDTA
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QGEFLDRRAAEAGIERTAATKAVRAGEFTSGVTIPVGSRFYVDNLYFQYTADGTLICETP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECEEEEEECCCEEEEECC
GEAGNANLTGRNLLSLDTIPGLETAIVKEILIPGREEEGDDSLRERYFTRVRREAVSANK
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCH
MHYKEWAEEVDGVGKAKIFPLWNGEGTVKIVVTNANLEPASPILIQKVKDYIDPEPGQGE
HHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCC
GQAPIGAVVTVESAVWKEVEISAEVLPEINHSIDEVKSEIEEGVLNFFKKMAFEDNVIRL
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEH
SQINNIVYNSPSVSDYSNIQINGTSENLVLSDVEIPKLGQVKIIEQTR
HHHCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377