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The map label for this gene is yjdI

Identifier: 16078271

GI number: 16078271

Start: 1277686

End: 1278165

Strand: Direct

Name: yjdI

Synonym: BSU12060

Alternate gene names: 16078271

Gene position: 1277686-1278165 (Clockwise)

Preceding gene: 16078268

Following gene: 16078275

Centisome position: 30.31

GC content: 41.46

Gene sequence:

>480_bases
ATGGCGAAAAAAATGGCAAAAACAAATGCGGTTCGTCTGATAGAACAGCAGAACATCTCTTATGAGGTATTAGGGTATAA
AACAGACGGCCAGCCGGTAGATGGCATCTCTGTTGCGGAAAAAATCGGTTATTCTTTGAAATATGTATATAAAACGTTGG
TTGCAGCAGCAGGAACAAATCATTATTATGTCTTTGTTGTACCCGTTGCAGAAGAGTTAGATGTAAAAAAGGCAGCAAAG
GTGACAGGGGAAAAGAAAATAGAAATGATTGCAATGAAGGAGCTGTTAGCGGTAACTGGCTATCTTCGCGGCGGCTGCTC
GCCAATTGGCATGAAAAAATTGTTCCCGACCTATATTGATGCATCTGCAGAAACGCTTGATTTTATTATTGTCAGTGCAG
GGAAAATCGGTATGCAGCTAAAGTTGGCGCCACAAGATTTAGCCAGATCATGTGATGCCGCATTTGCAGAAATTGTATAG

Upstream 100 bases:

>100_bases
ATTCAATGCTAGTAACCTTGAAAATGCAGGTTAGGATGATAGAATTTACATATTACTGCAAGAAGTTAGACATACATCAT
TTTGATAGTGGGTGAAAACA

Downstream 100 bases:

>100_bases
ATGCAGATATAGGGGAACGAAAAAGCTTAGTCATATCGATTAAGCTTTTTCCGCATCCCTTTCAAATATGATTTCAAAAT
AAGCAGCTGCCCCATACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MAKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGYSLKYVYKTLVAAAGTNHYYVFVVPVAEELDVKKAAK
VTGEKKIEMIAMKELLAVTGYLRGGCSPIGMKKLFPTYIDASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV

Sequences:

>Translated_159_residues
MAKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGYSLKYVYKTLVAAAGTNHYYVFVVPVAEELDVKKAAK
VTGEKKIEMIAMKELLAVTGYLRGGCSPIGMKKLFPTYIDASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV
>Mature_158_residues
AKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGYSLKYVYKTLVAAAGTNHYYVFVVPVAEELDVKKAAKV
TGEKKIEMIAMKELLAVTGYLRGGCSPIGMKKLFPTYIDASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786688, Length=154, Percent_Identity=44.8051948051948, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJDI_BACSU (O31650)

Other databases:

- EMBL:   AL009126
- PIR:   D69849
- RefSeq:   NP_389088.1
- HSSP:   P45202
- ProteinModelPortal:   O31650
- SMR:   O31650
- EnsemblBacteria:   EBBACT00000002264
- GeneID:   936435
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12060
- NMPDR:   fig|224308.1.peg.1207
- GenoList:   BSU12060
- GeneTree:   EBGT00050000002516
- HOGENOM:   HBG727700
- OMA:   NNPVGIW
- PhylomeDB:   O31650
- ProtClustDB:   CLSK887090
- BioCyc:   BSUB:BSU12060-MONOMER
- InterPro:   IPR004369
- InterPro:   IPR007214
- Gene3D:   G3DSA:3.90.960.10
- TIGRFAMs:   TIGR00011

Pfam domain/function: PF04073 YbaK; SSF55826 YbaK/aa-tRNA-synth-assoc-reg

EC number: NA

Molecular weight: Translated: 17259; Mature: 17128

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGYSLKYVYKTLVAAAGTN
CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCC
HYYVFVVPVAEELDVKKAAKVTGEKKIEMIAMKELLAVTGYLRGGCSPIGMKKLFPTYID
CEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
ASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV
CCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGYSLKYVYKTLVAAAGTN
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCC
HYYVFVVPVAEELDVKKAAKVTGEKKIEMIAMKELLAVTGYLRGGCSPIGMKKLFPTYID
CEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
ASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV
CCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377