Click here to switch to the map view.

The map label for this gene is yjdF

Identifier: 16078268

GI number: 16078268

Start: 1275809

End: 1276291

Strand: Direct

Name: yjdF

Synonym: BSU12030

Alternate gene names: 16078268

Gene position: 1275809-1276291 (Clockwise)

Preceding gene: 16078267

Following gene: 16078271

Centisome position: 30.26

GC content: 39.54

Gene sequence:

>483_bases
ATGTCAGTAACCTTCCCCTCCTCGGGATGTCCATCATTCTTTAATATCTTTTATGAGGAGGGAATCGTTATGAAATTAAC
GATTTACTACGATGGTCAGTTTTGGGTAGGCGTTGTTGAAGTTGTGGACAATGGAAAGCTAAGAGCCTTTCGTCATCTTT
TTGGCAAAGAGCCGAGGGATTCTGAAGTATTAGAGTTTGTTCATAACCAACTTTTGAATATGATGGCCCAAGCTGAGCAG
GAAGGAGTGCGTTTACAAGGCAGGCGTCAAAAAAAGATCAATCCAAAAAGATTGCAGCGCCAGGTTTCAAAAGAGTTGAA
AAACGCCGGAGTAACTTCTAAAGCTCAAGAGGCGATAAAGCTAGAGCTTGAAGCAAGAAAGCAAAAGAAAAAACAAATAA
TGAAAGAACAACGAGAACATGTAAAAGAGCAAAGGTATATGCTCAAAAAGCAAAAAGCGAAAAAGAAGCACAGAGGTAAA
TAA

Upstream 100 bases:

>100_bases
AAGAGTTTAATAGTTGGAGAAGAAATGTTACACTCTTTTCTGTATATGGTAAAGAATGAAAAAACACGATTCGGTTGGTA
GTCCGGATGCATGATTGAGA

Downstream 100 bases:

>100_bases
TCCAAACAAAAGCAGGCGCAGTGCCTGCTTTTGTAATTAAGGACTCTACTTTGTAACATATATCCAATGTTTATACTCCG
CTGATTTATGATTCAATATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQ
EGVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK

Sequences:

>Translated_160_residues
MSVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQ
EGVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK
>Mature_159_residues
SVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQE
GVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJDF_BACSU (O31647)

Other databases:

- EMBL:   AL009126
- PIR:   A69849
- RefSeq:   NP_389085.1
- EnsemblBacteria:   EBBACT00000001006
- GeneID:   939820
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12030
- NMPDR:   fig|224308.1.peg.1204
- GenoList:   BSU12030
- GeneTree:   EBGT00050000002618
- HOGENOM:   HBG514991
- OMA:   GARYIFG
- ProtClustDB:   CLSK887089
- BioCyc:   BSUB:BSU12030-MONOMER
- InterPro:   IPR016787
- PIRSF:   PIRSF021328

Pfam domain/function: PF11208 DUF2992

EC number: NA

Molecular weight: Translated: 18822; Mature: 18691

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRD
CCCCCCCCCCHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCCH
SEVLEFVHNQLLNMMAQAEQEGVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
LELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRD
CCCCCCCCCHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCCH
SEVLEFVHNQLLNMMAQAEQEGVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
LELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377