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The map label for this gene is yhdL

Identifier: 16078016

GI number: 16078016

Start: 1028511

End: 1029587

Strand: Reverse

Name: yhdL

Synonym: BSU09510

Alternate gene names: 16078016

Gene position: 1029587-1028511 (Counterclockwise)

Preceding gene: 16078017

Following gene: 16078015

Centisome position: 24.42

GC content: 42.43

Gene sequence:

>1077_bases
ATGATGAATGAAGAATTTAAAAAGCGTTTTGATCAATATAAAAATGGGGAAATGAGCGACCAGGAAATGACTGCATTTGA
GGAAGAACTCGAGAAGCTTGAAGTATATCAGGAACTGATTGACAGCGAACTAGAGGACGATAACGATTGGGATCTCAGCA
TCAGTCCTGAAAAACAAAAAGCGATTTTAGCCTACGGCAAACGCAAGTCTTATTTGCGAATTTCTGTGCTTGCCGTCATT
TCGACATTGATGATTTTGCCGCTTTGTACGCTGGGAAGCTACCTCTATTACGGAATGGGTGGAAAACACAGCACCGGCAA
TGAGTTTATGGAAACTGCCGCAGTCACTGTAGCCCTGACCATGCCGAATGTTCTTGTTGATACTTCCGGACTGAAAAGCC
AAGTGAAGCTATTTGGAATGAATACGGAATTCCCGCTGCAAAAGCAGATTGGCACGAAGACGGCTGCCGTAGGGAATGAA
CGGGTTGAAATGTTTTATAACAAAGTAAAAGCGCCGGCAGTAAACTACTATGACTTAGAAGTGAATAAAACCGGCCATTA
CTTTACACATCCTTCAAACAAGTCTGAACAAACGACCGCAAAAGCAGAAAAAACGTTAAGCACATTGCCTGAAGGAACGG
TATCAGAGGTCTACCTTTCATATGACCGTGCATATCCGACAAAAGACGTGTATAACAAATTCAAAGGCTATGATGTGAGC
TTTTTGTGGAACGCAATCGAAACAGAGAAAAACACAAATAAGACAGCTTCCACAGAACCTCTTGGCTATCCTGGAAAGGA
TTCAAAGTTCTTGGCCGCCCTTAATACAAAAGGCAAGTCGAATGGCGATCAGTTTATCAACGCCCTGAAATTCATGTCCA
AACACGAAAAATGGGCTCAGGTCATTTCAAAACGGAAAGACCTGAATGTAGATAACCGATTAGATTATGTAGAGAAAAAC
GGTGTCAATGTATACGGTTCGGTCGTTACAGGGCCAACCAAGGAAATCCAGCGCATGCTGAAAAATAAATCTGTAAAATC
AGCGAATGTCGGCGAGGTGGAATTATGGAACTGGTAA

Upstream 100 bases:

>100_bases
AAAGAAGCATCCCATATTATGAATATTTCAGAGGCGAATTTTAAAAGTGTTTTATTTCGTGCCAGACAGCGGCTGAAAGC
ACTTTATAATAGAGGTGTTA

Downstream 100 bases:

>100_bases
GAATTTTTAAAGAACACAATGTATTCGGCTGGATCTCTGTCGGGACAGCGGTTCTGTCCCTGCTGTTGCTGAATTTGGCC
ATTATCAGCAACGTCACGTT

Product: negative regulator of the activity of sigma-M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSELEDDNDWDLSISPEKQKAILAYGKRKSYLRISVLAVI
STLMILPLCTLGSYLYYGMGGKHSTGNEFMETAAVTVALTMPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNE
RVEMFYNKVKAPAVNYYDLEVNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVYLSYDRAYPTKDVYNKFKGYDVS
FLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNTKGKSNGDQFINALKFMSKHEKWAQVISKRKDLNVDNRLDYVEKN
GVNVYGSVVTGPTKEIQRMLKNKSVKSANVGEVELWNW

Sequences:

>Translated_358_residues
MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSELEDDNDWDLSISPEKQKAILAYGKRKSYLRISVLAVI
STLMILPLCTLGSYLYYGMGGKHSTGNEFMETAAVTVALTMPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNE
RVEMFYNKVKAPAVNYYDLEVNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVYLSYDRAYPTKDVYNKFKGYDVS
FLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNTKGKSNGDQFINALKFMSKHEKWAQVISKRKDLNVDNRLDYVEKN
GVNVYGSVVTGPTKEIQRMLKNKSVKSANVGEVELWNW
>Mature_358_residues
MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSELEDDNDWDLSISPEKQKAILAYGKRKSYLRISVLAVI
STLMILPLCTLGSYLYYGMGGKHSTGNEFMETAAVTVALTMPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNE
RVEMFYNKVKAPAVNYYDLEVNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVYLSYDRAYPTKDVYNKFKGYDVS
FLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNTKGKSNGDQFINALKFMSKHEKWAQVISKRKDLNVDNRLDYVEKN
GVNVYGSVVTGPTKEIQRMLKNKSVKSANVGEVELWNW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHDL_BACSU (O07581)

Other databases:

- EMBL:   Y14082
- EMBL:   AL009126
- PIR:   B69826
- RefSeq:   NP_388832.1
- ProteinModelPortal:   O07581
- IntAct:   O07581
- EnsemblBacteria:   EBBACT00000002782
- GeneID:   939753
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09510
- NMPDR:   fig|224308.1.peg.951
- GenoList:   BSU09510
- GeneTree:   EBGT00050000001676
- HOGENOM:   HBG338674
- OMA:   KVYGIVI
- ProtClustDB:   CLSK2301445
- BioCyc:   BSUB:BSU09510-MONOMER
- GO:   GO:0006350

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40581; Mature: 40581

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xda1b658)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSELEDDNDWDLSISPEKQK
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH
AILAYGKRKSYLRISVLAVISTLMILPLCTLGSYLYYGMGGKHSTGNEFMETAAVTVALT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEE
MPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNERVEMFYNKVKAPAVNYYDLE
CCCCEEECCCCCCEEEEEECCCCCCHHHHHCCHHHHCCHHHHHHHHHHHCCCCCEEEEEE
VNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVYLSYDRAYPTKDVYNKFKGYDVS
ECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCHH
FLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNTKGKSNGDQFINALKFMSKHEKWAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VISKRKDLNVDNRLDYVEKNGVNVYGSVVTGPTKEIQRMLKNKSVKSANVGEVELWNW
HHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEECCH
>Mature Secondary Structure
MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSELEDDNDWDLSISPEKQK
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH
AILAYGKRKSYLRISVLAVISTLMILPLCTLGSYLYYGMGGKHSTGNEFMETAAVTVALT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEE
MPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNERVEMFYNKVKAPAVNYYDLE
CCCCEEECCCCCCEEEEEECCCCCCHHHHHCCHHHHCCHHHHHHHHHHHCCCCCEEEEEE
VNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVYLSYDRAYPTKDVYNKFKGYDVS
ECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCHH
FLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNTKGKSNGDQFINALKFMSKHEKWAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VISKRKDLNVDNRLDYVEKNGVNVYGSVVTGPTKEIQRMLKNKSVKSANVGEVELWNW
HHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEECCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 10216858