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The map label for this gene is yhdK

Identifier: 16078015

GI number: 16078015

Start: 1028233

End: 1028523

Strand: Reverse

Name: yhdK

Synonym: BSU09500

Alternate gene names: 16078015

Gene position: 1028523-1028233 (Counterclockwise)

Preceding gene: 16078016

Following gene: 16078013

Centisome position: 24.4

GC content: 45.02

Gene sequence:

>291_bases
ATGGAACTGGTAAGAATTTTTAAAGAACACAATGTATTCGGCTGGATCTCTGTCGGGACAGCGGTTCTGTCCCTGCTGTT
GCTGAATTTGGCCATTATCAGCAACGTCACGTTTTATTCCTATCAAATGCTTCCGTTCGCCATGGCTGCCGTTCCGTTCG
GCGTTGTTGAACTCTTCATCAAGAGAGGGCGCACAGGTCCAGGCCTGCTCGGCGTCATCCTTAATCTCTTTGTGATTATT
TGTGTGTATACCATTGTATCTGTAGATACGAATTTACAGTTTGGCTTTTAA

Upstream 100 bases:

>100_bases
TCAATGTATACGGTTCGGTCGTTACAGGGCCAACCAAGGAAATCCAGCGCATGCTGAAAAATAAATCTGTAAAATCAGCG
AATGTCGGCGAGGTGGAATT

Downstream 100 bases:

>100_bases
AAAAGACGCCTTTTCAGGCGTCTTTTTTCGTTATACCGGTTTTCGGAACAAATAACTTTCTATAGTAAAACCCATTTTAT
CTGTATAAAATCGATGTGCG

Product: negative regulator of the activity of sigma-M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQMLPFAMAAVPFGVVELFIKRGRTGPGLLGVILNLFVII
CVYTIVSVDTNLQFGF

Sequences:

>Translated_96_residues
MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQMLPFAMAAVPFGVVELFIKRGRTGPGLLGVILNLFVII
CVYTIVSVDTNLQFGF
>Mature_96_residues
MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQMLPFAMAAVPFGVVELFIKRGRTGPGLLGVILNLFVII
CVYTIVSVDTNLQFGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHDK_BACSU (O07580)

Other databases:

- EMBL:   Y14082
- EMBL:   AL009126
- PIR:   A69826
- RefSeq:   NP_388831.1
- ProteinModelPortal:   O07580
- IntAct:   O07580
- EnsemblBacteria:   EBBACT00000003574
- GeneID:   936268
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09500
- NMPDR:   fig|224308.1.peg.950
- GenoList:   BSU09500
- GeneTree:   EBGT00050000002657
- HOGENOM:   HBG338673
- OMA:   VRIFKEH
- ProtClustDB:   CLSK886962
- BioCyc:   BSUB:BSU09500-MONOMER
- GO:   GO:0006350
- InterPro:   IPR020496
- ProDom:   PD065873

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10642; Mature: 10642

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe07e150)-; HASH(0xcee5430)-; HASH(0xcf172c8)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQMLPFAMAAVPFGVVELFI
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRGRTGPGLLGVILNLFVIICVYTIVSVDTNLQFGF
HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQMLPFAMAAVPFGVVELFI
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRGRTGPGLLGVILNLFVIICVYTIVSVDTNLQFGF
HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 10216858