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The map label for this gene is yscR

Identifier: 15618734

GI number: 15618734

Start: 932674

End: 933594

Strand: Reverse

Name: yscR

Synonym: CPn0825

Alternate gene names: 15618734

Gene position: 933594-932674 (Counterclockwise)

Preceding gene: 15618735

Following gene: 15618733

Centisome position: 75.89

GC content: 42.02

Gene sequence:

>921_bases
ATGCGATCCATTTTTCGATTTTCCCTTTGTTTTTTTACGCTGAGCGTCTCATGCTGTTTTGCTGACGCCAGTCTATATGA
AAACTCCTGTCCCTCGCGTTGTCAACCTACCCCTCCTCCCTCGAATTCTAATCCTTTGAACGTAGTACAACAGCCTGTTG
CTGCATCGTCAGTGCCTTCCTACATGCCCCCACTGAATGCTGATGATGTTCTCCCTAGAGACCATCTGTCAGATGGAAGT
TTCTCAGATACGTATCCAGACATTACAACGCAAGCGATCATCTTAATTTTCTTGGCCCTATCGCCTTTCCTGGTCATGTT
GCTCACTTCGTATCTAAAGATTATCATTACTTTAGTCTTATTACGTAACGCCTTAGGAGTACAACAAACACCTCCCAGTC
AAGTCCTCAATGGGATTGCACTCATCCTATCTATTTATGTGATGTTCCCCACGGGAGTGGCTATGTATAAAGATGCTCGC
AAGGAAATCGAAGCCAATACCATTCCTCAAAGCCTCTTCACTGCAGAAGGTGCTGAAACAGTGTTTGTCGCTTTAAACAA
ATCTAAAGAACCTTTGCGCTCTTTCTTAATTCGCAACACTCCAAAAGCACAAATTCAAAGCTTTTACAAGATCTCACAGA
AAACCTTCCCTTCGGAAATTCGAGCGCACCTCACTGCCTCCGACTTTGTAATCATTATTCCTGCTTTTATTATGGGTCAG
ATAAAAAATGCTTTCGAAATTGGAGTCTTGATCTATCTACCTTTCTTTGTTATTGATTTAGTGACTGCTAACGTTCTTGT
AGCGATGCAGATGATGATGTTATCCCCTCTATCGATTTCGTTACCTTTAAAGTTACTTTTGATCGTCATGGTAGACGGAT
GGACATTACTGCTCCAAGGGCTTATGATCAGCTTTAAATAA

Upstream 100 bases:

>100_bases
CGAAGAACCCTGTAGACGAGCCATCTGAGACTTCATCATCCACGGATTCTTCTTCTTTATCTAATGATCAGGATAAGAAA
GAATAAAGGTATTCACTATT

Downstream 100 bases:

>100_bases
GGACACGTGCCGTGTTAGCATTTTTCGCAACTAGTTTCAAATCTGTTCTTTTTGAGTACTCCTACCAATCATTATTACTT
ATTTTGATTGTTTCGGCACC

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPSYMPPLNADDVLPRDHLSDGS
FSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDAR
KEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQ
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISFK

Sequences:

>Translated_306_residues
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPSYMPPLNADDVLPRDHLSDGS
FSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDAR
KEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQ
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISFK
>Mature_306_residues
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPSYMPPLNADDVLPRDHLSDGS
FSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDAR
KEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQ
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISFK

Specific function: Important for pathogenicity [H]

COG id: COG1338

COG function: function code NU; Flagellar biosynthesis pathway, component FliP

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=204, Percent_Identity=39.7058823529412, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 33824; Mature: 33824

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCC
YMPPLNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDARKEIEANTIPQSLFTAEGAET
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCE
VFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQ
EEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHH
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHH
LMISFK
HHHCCC
>Mature Secondary Structure
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCC
YMPPLNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDARKEIEANTIPQSLFTAEGAET
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCE
VFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQ
EEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHH
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHH
LMISFK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1312532 [H]