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The map label for this gene is hydC

Identifier: 11498975

GI number: 11498975

Start: 1230759

End: 1231454

Strand: Reverse

Name: hydC

Synonym: AF1379

Alternate gene names: NA

Gene position: 1231454-1230759 (Counterclockwise)

Preceding gene: 11498976

Following gene: 11498974

Centisome position: 56.53

GC content: 49.43

Gene sequence:

>696_bases
ATGGAGTGCAAGAAATGCGGAAGTGTGGCCGTTGAAAGGCACTCGAAGTTTGTGAGGAGCTGCCACTGGGGAATAGTGGT
TACTGGGATAATCACCGCCCTCTCAGGAATGCAGCTCTCAAAACTTTTTGGGTTTACCCTTTTCGATGATGCTTACGCAC
TTCACATAAGGATGAGCTTCGTCTTCGCTGGGCTGTGGACTCTGTTCATGTACTTCAGCATCGCAGAGGAGTGGAAGTGG
ATCAAACCTTCAAGGATACCCTACAGCATCAAGTTCGTATTGGAGGAGGCTGTTGCGTGGATAAAGGGTGGACATGTTGG
CGACCCAAGAGCCTACGACCCAAGAAGGAGGGAATATGTTGAGAAAATAATCCCAAGTCAGGTGCTCGTCTTCTGGACGT
ATGTACTTCTTACGGCAATCATAGGGATTACGGGGCTGGCAATGCTCTATCCTGAATACTTCGGCCCGGTGTATTCTGCT
GCCGAGAAGATGGGATTACTTTTCGGGACTGACAACAGCTACGCATTCATAAGAGGTCTTCACAGGCTGACGATGTTTCT
CTATGCAACAGTGATGATAATGCACGCCTACGCAGCAACGATATTCGGAACGCTGTCATCAATGATAAGCGGCTACAGGA
GGGAAAAAGTTGTCTCGGATTCTGGTCGTGGGAGTAGGGAACCCGCTGATGGGTGA

Upstream 100 bases:

>100_bases
GAAAGGCTGAACGGCCAGATTTACAACACCTCTCTCACCCTGATGGTCGTCAGAAGCTTCGACCCGTGCATTGCCTGCGC
TGTCCACGTGGTGAGGTAGT

Downstream 100 bases:

>100_bases
TGATGGCCTCGGCATCAGAGTTGTGGAGGAGCTCAAGCGAAGAAGGCTGCCAAAAAACGTCACCGTGATGGATGGTGGAA
CGGGAAGCTTTGATCTCGTG

Product: quinone-reactive Ni/Fe-hydrogenase B-type cytochrome subunit (hydC)

Products: NA

Alternate protein names: Cytochrome B

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MECKKCGSVAVERHSKFVRSCHWGIVVTGIITALSGMQLSKLFGFTLFDDAYALHIRMSFVFAGLWTLFMYFSIAEEWKW
IKPSRIPYSIKFVLEEAVAWIKGGHVGDPRAYDPRRREYVEKIIPSQVLVFWTYVLLTAIIGITGLAMLYPEYFGPVYSA
AEKMGLLFGTDNSYAFIRGLHRLTMFLYATVMIMHAYAATIFGTLSSMISGYRREKVVSDSGRGSREPADG

Sequences:

>Translated_231_residues
MECKKCGSVAVERHSKFVRSCHWGIVVTGIITALSGMQLSKLFGFTLFDDAYALHIRMSFVFAGLWTLFMYFSIAEEWKW
IKPSRIPYSIKFVLEEAVAWIKGGHVGDPRAYDPRRREYVEKIIPSQVLVFWTYVLLTAIIGITGLAMLYPEYFGPVYSA
AEKMGLLFGTDNSYAFIRGLHRLTMFLYATVMIMHAYAATIFGTLSSMISGYRREKVVSDSGRGSREPADG
>Mature_231_residues
MECKKCGSVAVERHSKFVRSCHWGIVVTGIITALSGMQLSKLFGFTLFDDAYALHIRMSFVFAGLWTLFMYFSIAEEWKW
IKPSRIPYSIKFVLEEAVAWIKGGHVGDPRAYDPRRREYVEKIIPSQVLVFWTYVLLTAIIGITGLAMLYPEYFGPVYSA
AEKMGLLFGTDNSYAFIRGLHRLTMFLYATVMIMHAYAATIFGTLSSMISGYRREKVVSDSGRGSREPADG

Specific function: Unknown

COG id: COG2864

COG function: function code C; Cytochrome b subunit of formate dehydrogenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26152; Mature: 26152

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECKKCGSVAVERHSKFVRSCHWGIVVTGIITALSGMQLSKLFGFTLFDDAYALHIRMSF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHH
VFAGLWTLFMYFSIAEEWKWIKPSRIPYSIKFVLEEAVAWIKGGHVGDPRAYDPRRREYV
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
EKIIPSQVLVFWTYVLLTAIIGITGLAMLYPEYFGPVYSAAEKMGLLFGTDNSYAFIRGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHH
HRLTMFLYATVMIMHAYAATIFGTLSSMISGYRREKVVSDSGRGSREPADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MECKKCGSVAVERHSKFVRSCHWGIVVTGIITALSGMQLSKLFGFTLFDDAYALHIRMSF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHH
VFAGLWTLFMYFSIAEEWKWIKPSRIPYSIKFVLEEAVAWIKGGHVGDPRAYDPRRREYV
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
EKIIPSQVLVFWTYVLLTAIIGITGLAMLYPEYFGPVYSAAEKMGLLFGTDNSYAFIRGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHH
HRLTMFLYATVMIMHAYAATIFGTLSSMISGYRREKVVSDSGRGSREPADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA