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Identifier: 15646039

GI number: 15646039

Start: 1499410

End: 1501479

Strand: Reverse

Name: Not Available

Synonym: HP1430

Alternate gene names: NA

Gene position: 1501479-1499410 (Counterclockwise)

Preceding gene: 15646040

Following gene: 15646038

Centisome position: 90.02

GC content: 43.53

Gene sequence:

>2070_bases
ATGACGGATAACAACCAAAACAATGAAAACCATGAAAACAGCAGTGAAAATTCAAAAGCTGATGAGATGCGAGCCGGAGC
GTTTGAGCGCTTCACCAACCGCAAAAAGCGTTTCAGAGAAAACGCGCAAAAAAACGCAGAGTATTCAAACCATGAAGCGT
CTTCGCACCATAAAAAAGAGCATCGCCCTAACAAAAAACCAAACAACCACCACAAACAAAAACATGCCAAAACACGAAAT
TACGCCCAAGAAGAATTGGATAGCAACAAAGTAGAGGGCGTTACGGAAATTTTGCATGTGAATGAGAGAGGGACTTTAGG
CTTTCATAAGGAGTTAAAAAAGGGCGTTGAAGCGAATAACAAGATCCAAGTGGAGCATTTAAACCCGCATTATAAGATGA
ACTTAAACTCTAAAGCGAGCGTTAAAATCACGCCTTTAGGGGGCTTGGGTGAGATTGGGGGGAACATGATGGTCATTGAA
ACCCCAAAAAGCGCGATCGTGATTGATGCGGGCATGAGCTTCCCTAAAGAGGGGCTCTTTGGCGTGGATATTTTAATCCC
GGATTTTTCCTACTTGCACCAAATCAAGGACAAAATCGCTGGCATTATCATCACCCATGCCCATGAAGATCACATAGGGG
CCACGCCTTATTTGTTTAAAGAGCTGCAATTCCCCCTTTATGGCACGCCCTTGAGTTTGGGGCTGATTGGGAGCAAGTTT
GATGAACATGGTTTGAAAAAATACCGCTCGTATTTTAAAATCGTAGAAAAGCGCTGTCCCATTAGCGTGGGCGAATTTAT
CATTGAATGGATCCACATCACGCATTCTATCATTGACAGCAGCGCTTTAGCGATCCAAACTAAAGCCGGAACGATCATCC
ACACCGGCGATTTTAAAATCGATCACACCCCGGTGGATAATTTGCCCACGGATTTGTATCGTTTAGCGCACTATGGCGAA
AAGGGGGTGATGCTTCTTTTAAGCGATTCCACCAACTCCCATAAATCCGGGACTACGCCGAGTGAAAGCACCATAGCGCC
GGCTTTTGATACCCTTTTTAAAGAAGCGCAAGGGAGGGTGATTATGAGCACCTTCTCTAGCAATATCCACCGGGTCTATC
AAGCCATACAATACGGCATTAAATACAACCGCAAGATCGCTGTGATCGGGCGCTCTATGGAAAAAAACCTAGACATCGCT
AGAGAATTGGGCTATATCCATTTGCCTTATCAATCTTTTATTGAAGCCAATGAAGTCGCCAAATACCCGGACAATGAAAT
CTTAATCGTAACGACCGGCTCACAAGGCGAAACCATGAGCGCGCTTTATCGCATGGCGACTGATGAACACCGTCATATTT
CTATCAAACCCAACGATTTAGTCATCATTTCCGCTAAAGCCATTCCTGGCAATGAAGCGAGCGTTTCAGCGGTGTTGAAT
TTCTTGATCAAAAAAGAAGCTAAAGTGGCTTATCAAGAATTTGACAATATCCATGTGAGCGGGCATGCCGCCCAAGAAGA
GCAAAAGCTCATGTTAAGACTCATTAAGCCTAAGTTTTTCTTACCCGTGCATGGGGAATATAACCATGTCGCGCGCCACA
AACAAACCGCTATTTCTTGCGGAGTGCCTGAAAAAAATATCTATTTAATGGAGGATGGCGATCAGGTGGAGGTTGGCCCT
GCGTTCATCAAAAAAGTCGGCACGATTAAAAGCGGGAAAAGCTATGTGGATAACCAAAGCAATTTGAGTATTGATACAAG
CATCGTGCAACAAAGAGAAGAAGTCGCTAGCGCCGGGGTGTTTGTGGCTACGATTTTTGTGAATAAAAACAAGCAAGCGC
TTTTAGAAAGCTCTCAATTTTCCAGTTTAGGGCTTGTGGGTTTCAAAGATGAAAAGCCTTTGATCAAAGAAATTCAAGGG
GGCTTAGAGGTGTTATTGAAATCCAGCAACGCCGAAATTTTGAATAACCCTAAAAAATTAGAAGATCACACTCGTAATTT
CATCAGAAAAGCGCTCTTTAAAAAGTTTAGAAAATACCCGGCTATCATTTGTCATGCCCATTCTTTTTGA

Upstream 100 bases:

>100_bases
AGCGTGAGAGCGTCTGAGATAAAAGATTATCTCAAGCTCTTAAATTACCTTTTAAAAGGCTAATGCCTTTTTAAAAAATT
GAAATAAAGGAATAAAAGTT

Downstream 100 bases:

>100_bases
TTGTAACGCTATTGCTTCACAAGTTTTAAAAGATGAAGCGAGCGCGCTTTTAGAAAGCGTTGGACAATTCCAAAAACCCA
ACGATTTAGAAGCGATTGTC

Product: ATP-binding protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 689; Mature: 688

Protein sequence:

>689_residues
MTDNNQNNENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAEYSNHEASSHHKKEHRPNKKPNNHHKQKHAKTRN
YAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIE
TPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKF
DEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGE
KGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIA
RELGYIHLPYQSFIEANEVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLN
FLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVGP
AFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLIKEIQG
GLEVLLKSSNAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIICHAHSF

Sequences:

>Translated_689_residues
MTDNNQNNENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAEYSNHEASSHHKKEHRPNKKPNNHHKQKHAKTRN
YAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIE
TPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKF
DEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGE
KGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIA
RELGYIHLPYQSFIEANEVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLN
FLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVGP
AFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLIKEIQG
GLEVLLKSSNAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIICHAHSF
>Mature_688_residues
TDNNQNNENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAEYSNHEASSHHKKEHRPNKKPNNHHKQKHAKTRNY
AQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIET
PKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKFD
EHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGEK
GVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIAR
ELGYIHLPYQSFIEANEVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLNF
LIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVGPA
FIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLIKEIQGG
LEVLLKSSNAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIICHAHSF

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 77387; Mature: 77256

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNNQNNENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAEYSNHEASSHHKKE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
HRPNKKPNNHHKQKHAKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANN
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCHHHHHHHCCCCCC
KIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLF
EEEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCCCCCCCCCC
GVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKF
EEEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCH
DEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEE
DHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRV
CCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
IMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANEVA
EEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHHHHCHHHHH
KYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLN
CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHH
FLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISC
HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHEEEC
GVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGV
CCCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHCCE
FVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLIKEIQGGLEVLLKSSNAEILNNPKKL
EEEEEEECCCHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHEEHCCCCCHHHCCCHHH
EDHTRNFIRKALFKKFRKYPAIICHAHSF
HHHHHHHHHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure 
TDNNQNNENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAEYSNHEASSHHKKE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
HRPNKKPNNHHKQKHAKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANN
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCHHHHHHHCCCCCC
KIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLF
EEEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCCCCCCCCCC
GVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKF
EEEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCH
DEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEE
DHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRV
CCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
IMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANEVA
EEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHHHHCHHHHH
KYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLN
CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHH
FLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISC
HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHEEEC
GVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGV
CCCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHCCE
FVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLIKEIQGGLEVLLKSSNAEILNNPKKL
EEEEEEECCCHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHEEHCCCCCHHHCCCHHH
EDHTRNFIRKALFKKFRKYPAIICHAHSF
HHHHHHHHHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]