| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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The map label for this gene is glyS
Identifier: 15645587
GI number: 15645587
Start: 1032528
End: 1034633
Strand: Reverse
Name: glyS
Synonym: HP0972
Alternate gene names: 15645587
Gene position: 1034633-1032528 (Counterclockwise)
Preceding gene: 15645591
Following gene: 15645586
Centisome position: 62.03
GC content: 37.32
Gene sequence:
>2106_bases TTGCATTCAGATGAATTGTTAGTAGAGATTTTAGTTGAAGAATTGCCCGCGCAAGCGTTATTGAATGAATATAAAGAAAT GCCTAAAAAACTCCACGCTCTTTTTAATAAGCGCGCTTTAGAAGTGGGAAATATAGAGATTTTTTACACCCCTAGGCGTT TGTGTTTGCTCATTAAAGACTTTCCCCTTTTAACCCAAGAAACCAAAGAGGAATTTTTTGGGCCTCCCGTTAAAATCGCA TGCAATCATCAAGATAAAACGCAAGGGTTGAACGCGTTAGGTTTAGGGTTTTATCAAAAATTAGGGTTAAAAGATCACCA GTATTTCCAAACAGCGTTTAAAAATAATAAAGAAGTGCTTTATCACGCTAAAATCCATGAAAAAGAGCCTACAAAAGACT TAATCATGCCCATTGTGTTAGAGTTTTTAGAGGGTTTGAATTTCGGAAAGTCTATGCGTTGGGGCAATGTGGAAAAAAGC TTTATCAGACCCATTCATAATATTTGCGTGTTGTTTAATGGGGAAGATTTTAGCGGTATTGAAGTCAAAGAGTATGGCTT TAAAACCAAGCAAGCCACAAAAGTGCACCGACAAGAGGGTTTTGATTTTATCCAGGTGGATAGCCCTAAAGCGTATTTTG AAGTTTTAGAAAAAAACCATGTCATTTTAGACCCTAAAAAGCGCGAAGCTAAAATCTTACAAGAAATTAAAGAGCTAGAA ACAAAGCACCACATCATTGTAGAAACAGATAGGGATTTATTAGATGAGGTGGTAGCGATCACGGAATACCCCAGCGCGCT TTTAGGGGAGTTTGACAAGGCGTTTTTAAAATTACCCAGTGAAATCATCATCACTTCCATGAAAGAAAACCAACGCTATT TTGCAACCTTTTGTCAAAAAAGCCAAGAAGAAAGCCCAACATTACACAACGGCTTTATTGTGGTGAGTAACGCTATCAAT AAAGACAAGCAAAAAATCATTTTAGGCAACCAAAAGGTTTTAAAAGCCCGTTTGAGCGATGCGGTTTTCTTTTATGAAAA CGATCTCAAAAAGCCTTTAGATAACGCCCCTTTAGAGAGTGTGGTTTTTGTGCAAGGTTTAGGGACTTTAAAAGATAAAA TGGAGCGCGAATCAATCATCGCCCAATACTTGACGCAAAAATATATTTCATCTTTAAACATGCCTTTAGAAAAAGCCCTT GAGTTGGTTAAAAGAGCCGTTCAAATCGCTAAGGCGGATTTACTCAGTGAAGTGGTGTATGAATTTAGCGAGCTTCAAGG GATCATGGGCTATTACTACGCTTTAAAACAAAATGAAAACGAGTTAGTCGCCTTGAGTGTGAAAGAGCAGTATTTGCCCG CAAGCGAAAACGCTCCCTTGCCCTCTAGCGTTTTTAGTTCAATCGTGGCTTTGAGCTTGAAATTAGACAGCCTGTTTTCT CTTTTTAGCGTGGGTAAAATCCCTAGCGGATCTAAAGATCCTTTTGCTTTAAGGCGCTTGAGTTTTGGGCTATTGAAAAT CATCGCGCATTACGGGTTAGAATTTGATTTGAAAGCGGATTTGAAAAACCTTTTTCAAAAAGTGGGCGTTTATCAAAGCT TTGATTTAGAGATTTTAGAAAAGTTTTTACTGGAGCGCTTTCATAATTTAATAGATTGTAACCCCTCTATTATAAGGAGC GTGTTAAACACCAACGAGCGAGACATTGTTAAAATCATTCAAAAAGTCAAAGCCTTAAAACGCTTTTTAGACGATCCCAA GAACGCTCAAAAAAAAGAGTTGCTTTTTAGCGCTTTCAAACGCCTAGCCAATATCAATAAAGACAGAAACCCTAACGAGT CAAGCGAGTTTTCAACAAATCTTTTTAAAGAGCCAAAAGAGCATGCCCTTTTTGAAGCGTTTAATGCGATCAAAATGAAC GCTTTTGAGAGTTTGGATAGCAAAATAGAGGCTTATTTTGGTTTGCATGCACCTTTAGAAGAGTATTTTAAAAGCGTGCT AGTCATGGATAAAGATATAGAAATCCAAAAAAATCGTAAAAATTTCTTGTGGGGCGTGTATCAAAGTTTCTTAGAAATTG GGGATATTAAAGAAATTGCGATTTAG
Upstream 100 bases:
>100_bases TTTGTATTAAGAAATAAACTAAACTGAGTGTAAATTCAAGTATAATTCTAACATGATTTAGTCTTAAAAGTGATTTTGTT TTTTAGGGAGAATTGAGATT
Downstream 100 bases:
>100_bases TGGCTTCAAACGCAAAGTCTGGCGTTTTTGTTTGGGGGTAACTTTTTTAATGAGCATGTTTAGTGCGGGCATGCTTAGTG CTAAAATCTTTACCCTACAA
Product: glycyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 701; Mature: 701
Protein sequence:
>701_residues MHSDELLVEILVEELPAQALLNEYKEMPKKLHALFNKRALEVGNIEIFYTPRRLCLLIKDFPLLTQETKEEFFGPPVKIA CNHQDKTQGLNALGLGFYQKLGLKDHQYFQTAFKNNKEVLYHAKIHEKEPTKDLIMPIVLEFLEGLNFGKSMRWGNVEKS FIRPIHNICVLFNGEDFSGIEVKEYGFKTKQATKVHRQEGFDFIQVDSPKAYFEVLEKNHVILDPKKREAKILQEIKELE TKHHIIVETDRDLLDEVVAITEYPSALLGEFDKAFLKLPSEIIITSMKENQRYFATFCQKSQEESPTLHNGFIVVSNAIN KDKQKIILGNQKVLKARLSDAVFFYENDLKKPLDNAPLESVVFVQGLGTLKDKMERESIIAQYLTQKYISSLNMPLEKAL ELVKRAVQIAKADLLSEVVYEFSELQGIMGYYYALKQNENELVALSVKEQYLPASENAPLPSSVFSSIVALSLKLDSLFS LFSVGKIPSGSKDPFALRRLSFGLLKIIAHYGLEFDLKADLKNLFQKVGVYQSFDLEILEKFLLERFHNLIDCNPSIIRS VLNTNERDIVKIIQKVKALKRFLDDPKNAQKKELLFSAFKRLANINKDRNPNESSEFSTNLFKEPKEHALFEAFNAIKMN AFESLDSKIEAYFGLHAPLEEYFKSVLVMDKDIEIQKNRKNFLWGVYQSFLEIGDIKEIAI
Sequences:
>Translated_701_residues MHSDELLVEILVEELPAQALLNEYKEMPKKLHALFNKRALEVGNIEIFYTPRRLCLLIKDFPLLTQETKEEFFGPPVKIA CNHQDKTQGLNALGLGFYQKLGLKDHQYFQTAFKNNKEVLYHAKIHEKEPTKDLIMPIVLEFLEGLNFGKSMRWGNVEKS FIRPIHNICVLFNGEDFSGIEVKEYGFKTKQATKVHRQEGFDFIQVDSPKAYFEVLEKNHVILDPKKREAKILQEIKELE TKHHIIVETDRDLLDEVVAITEYPSALLGEFDKAFLKLPSEIIITSMKENQRYFATFCQKSQEESPTLHNGFIVVSNAIN KDKQKIILGNQKVLKARLSDAVFFYENDLKKPLDNAPLESVVFVQGLGTLKDKMERESIIAQYLTQKYISSLNMPLEKAL ELVKRAVQIAKADLLSEVVYEFSELQGIMGYYYALKQNENELVALSVKEQYLPASENAPLPSSVFSSIVALSLKLDSLFS LFSVGKIPSGSKDPFALRRLSFGLLKIIAHYGLEFDLKADLKNLFQKVGVYQSFDLEILEKFLLERFHNLIDCNPSIIRS VLNTNERDIVKIIQKVKALKRFLDDPKNAQKKELLFSAFKRLANINKDRNPNESSEFSTNLFKEPKEHALFEAFNAIKMN AFESLDSKIEAYFGLHAPLEEYFKSVLVMDKDIEIQKNRKNFLWGVYQSFLEIGDIKEIAI >Mature_701_residues MHSDELLVEILVEELPAQALLNEYKEMPKKLHALFNKRALEVGNIEIFYTPRRLCLLIKDFPLLTQETKEEFFGPPVKIA CNHQDKTQGLNALGLGFYQKLGLKDHQYFQTAFKNNKEVLYHAKIHEKEPTKDLIMPIVLEFLEGLNFGKSMRWGNVEKS FIRPIHNICVLFNGEDFSGIEVKEYGFKTKQATKVHRQEGFDFIQVDSPKAYFEVLEKNHVILDPKKREAKILQEIKELE TKHHIIVETDRDLLDEVVAITEYPSALLGEFDKAFLKLPSEIIITSMKENQRYFATFCQKSQEESPTLHNGFIVVSNAIN KDKQKIILGNQKVLKARLSDAVFFYENDLKKPLDNAPLESVVFVQGLGTLKDKMERESIIAQYLTQKYISSLNMPLEKAL ELVKRAVQIAKADLLSEVVYEFSELQGIMGYYYALKQNENELVALSVKEQYLPASENAPLPSSVFSSIVALSLKLDSLFS LFSVGKIPSGSKDPFALRRLSFGLLKIIAHYGLEFDLKADLKNLFQKVGVYQSFDLEILEKFLLERFHNLIDCNPSIIRS VLNTNERDIVKIIQKVKALKRFLDDPKNAQKKELLFSAFKRLANINKDRNPNESSEFSTNLFKEPKEHALFEAFNAIKMN AFESLDSKIEAYFGLHAPLEEYFKSVLVMDKDIEIQKNRKNFLWGVYQSFLEIGDIKEIAI
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=717, Percent_Identity=29.9860529986053, Blast_Score=290, Evalue=2e-79,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 80636; Mature: 80636
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSDELLVEILVEELPAQALLNEYKEMPKKLHALFNKRALEVGNIEIFYTPRRLCLLIKD CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEECCHHHHHHHHC FPLLTQETKEEFFGPPVKIACNHQDKTQGLNALGLGFYQKLGLKDHQYFQTAFKNNKEVL CCHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEE YHAKIHEKEPTKDLIMPIVLEFLEGLNFGKSMRWGNVEKSFIRPIHNICVLFNGEDFSGI EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCC EVKEYGFKTKQATKVHRQEGFDFIQVDSPKAYFEVLEKNHVILDPKKREAKILQEIKELE CHHHHCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH TKHHIIVETDRDLLDEVVAITEYPSALLGEFDKAFLKLPSEIIITSMKENQRYFATFCQK HCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH SQEESPTLHNGFIVVSNAINKDKQKIILGNQKVLKARLSDAVFFYENDLKKPLDNAPLES CCCCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHEEEHHHHCCCCCCCCHHH VVFVQGLGTLKDKMERESIIAQYLTQKYISSLNMPLEKALELVKRAVQIAKADLLSEVVY HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EFSELQGIMGYYYALKQNENELVALSVKEQYLPASENAPLPSSVFSSIVALSLKLDSLFS HHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LFSVGKIPSGSKDPFALRRLSFGLLKIIAHYGLEFDLKADLKNLFQKVGVYQSFDLEILE HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCCCCHHHHH KFLLERFHNLIDCNPSIIRSVLNTNERDIVKIIQKVKALKRFLDDPKNAQKKELLFSAFK HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RLANINKDRNPNESSEFSTNLFKEPKEHALFEAFNAIKMNAFESLDSKIEAYFGLHAPLE HHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH EYFKSVLVMDKDIEIQKNRKNFLWGVYQSFLEIGDIKEIAI HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCC >Mature Secondary Structure MHSDELLVEILVEELPAQALLNEYKEMPKKLHALFNKRALEVGNIEIFYTPRRLCLLIKD CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEECCHHHHHHHHC FPLLTQETKEEFFGPPVKIACNHQDKTQGLNALGLGFYQKLGLKDHQYFQTAFKNNKEVL CCHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEE YHAKIHEKEPTKDLIMPIVLEFLEGLNFGKSMRWGNVEKSFIRPIHNICVLFNGEDFSGI EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCC EVKEYGFKTKQATKVHRQEGFDFIQVDSPKAYFEVLEKNHVILDPKKREAKILQEIKELE CHHHHCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH TKHHIIVETDRDLLDEVVAITEYPSALLGEFDKAFLKLPSEIIITSMKENQRYFATFCQK HCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH SQEESPTLHNGFIVVSNAINKDKQKIILGNQKVLKARLSDAVFFYENDLKKPLDNAPLES CCCCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHEEEHHHHCCCCCCCCHHH VVFVQGLGTLKDKMERESIIAQYLTQKYISSLNMPLEKALELVKRAVQIAKADLLSEVVY HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EFSELQGIMGYYYALKQNENELVALSVKEQYLPASENAPLPSSVFSSIVALSLKLDSLFS HHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LFSVGKIPSGSKDPFALRRLSFGLLKIIAHYGLEFDLKADLKNLFQKVGVYQSFDLEILE HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCCCCHHHHH KFLLERFHNLIDCNPSIIRSVLNTNERDIVKIIQKVKALKRFLDDPKNAQKKELLFSAFK HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RLANINKDRNPNESSEFSTNLFKEPKEHALFEAFNAIKMNAFESLDSKIEAYFGLHAPLE HHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH EYFKSVLVMDKDIEIQKNRKNFLWGVYQSFLEIGDIKEIAI HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA