Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15645023

GI number: 15645023

Start: 404713

End: 405381

Strand: Reverse

Name: Not Available

Synonym: HP0395

Alternate gene names: 15645023

Gene position: 405381-404713 (Counterclockwise)

Preceding gene: 15645024

Following gene: 15645022

Centisome position: 24.31

GC content: 38.27

Gene sequence:

>669_bases
ATGTTAGATTATCGCCAAAAAATTGATGCTCTCATCACCAAAATAGAAAAGGCTCGCACCGCCTATTCAAGGCACCACAT
TGTCAAAATCGTGGCTGTTTCAAAAAACGCTTCCCCAGAAGCTATCCAACATTATTATAACTGCTCTCAAAGGGCTTTTG
GAGAAAATAAAGTTCAAGATTTAAAAACTAAAATGCATTCTTTAGAGCATTTGCCCCTTGAATGGCACATGATAGGCTCT
TTACAAGAAAATAAAATCAATGCGCTTTTGAGTTTAAAGCCCGCTCTTTTGCATTCTTTAGACTCTTTAAAACTCGCTTT
GAAAATAGAAAAGCGTTGCGAAATATTGGGCGTCAATTTAAACGCTCTTTTACAGGTTAATAGCGCGTATGAGGAAAGTA
AAAGCGGGGTGGTGCCTGAAGAAGCGCTAGAAATTTATTCTCAAATCAGTGAAACTTGCAAGCACCTCAAGCTTAAGGGG
CTTATGTGTATAGGGGCACACACAGATGATGAAAAGGAAATTGAAAAATCCTTTATCACCACCAAAAAGCTTTTTGACCA
AATAAAGAATGCGAGCGTTCTTTCAATGGGCATGAGTGATGATTTTGAATTAGCGATTGCTTGCGGGGCGAATCTTTTAA
GGATTGGCTCTTTTTTGTTCAAAGAGTAA

Upstream 100 bases:

>100_bases
CTTTTAAAAGATTTTGAAACTTTAAATCAAAAATTCCACCTCACGCATTCTTTCAGCACGCACAAAGAAGATCTATAAAG
AATAGCCATAAAGAAGAATT

Downstream 100 bases:

>100_bases
GATGCTAGAAACTTATGCACTTAAAAATGGGGCTGTTTTTATCTCTGATGCGCATTTTTTGCCCAAAAGCCCTCATTTAA
TCCATACGCTTAAAGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MLDYRQKIDALITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGS
LQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKG
LMCIGAHTDDEKEIEKSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE

Sequences:

>Translated_222_residues
MLDYRQKIDALITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGS
LQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKG
LMCIGAHTDDEKEIEKSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
>Mature_222_residues
MLDYRQKIDALITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGS
LQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKG
LMCIGAHTDDEKEIEKSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=214, Percent_Identity=35.981308411215, Blast_Score=108, Evalue=3e-24,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=34.070796460177, Blast_Score=107, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=36, Blast_Score=110, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=207, Percent_Identity=36.7149758454106, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI45550861, Length=209, Percent_Identity=36.8421052631579, Blast_Score=118, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25011; Mature: 25011

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDYRQKIDALITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
LKTKMHSLEHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNL
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCHHEEECCH
NALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFIT
HHEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHH
TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCCEEEECCCCCCEEHEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MLDYRQKIDALITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
LKTKMHSLEHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNL
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCHHEEECCH
NALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFIT
HHEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHH
TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCCEEEECCCCCCEEHEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]