| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645024
GI number: 15645024
Start: 405404
End: 407254
Strand: Reverse
Name: Not Available
Synonym: HP0396
Alternate gene names: 15645024
Gene position: 407254-405404 (Counterclockwise)
Preceding gene: 15645025
Following gene: 15645023
Centisome position: 24.42
GC content: 40.41
Gene sequence:
>1851_bases ATGCGAGATTTTTTAAAACTTTTAAAAAAGCATGATGAATTAAAAATCATTGACACCCCCCTTGAAGTGGATTTAGAAAT CGCTCATCTAGCCTATATAGAAGCGAAAAAACCTAATGGGGGCAAAGCCCTTTTATTCACGCAACCCATAAGAAAAGAGC ATGACCAGATCAAAACCTTTGGCATGCCTGTTTTAATGAACGCTTTTGGCTCTTTCAAACGCTTGGATCTTTTGTTAAAA ACCCCCATAGAAAGCCTGCAACAACGCATGCAAGCGTTCTTACACTTTAACGCTCCTAAAAATTTCACTGAGGGTTTGAA AGTCTTAAAAGATTTATGGGATTTAAGACACATTTTCCCTAAAAAAACCACTCGCCCTAAAGATCTCATCATCAAGCAAG ATAAAGAAGTCAATTTATTGGATCTACCCGTTTTAAAAACTTGGGAAAAAGATGGCGGGGCTTTTATCACTATGGGGCAA GTCTATACCCAAAGCTTGGATCATCAAAAAAAGAATTTAGGCATGTATCGTTTGCAAGTTTATGATAAAAACCATTTAGG CTTGCACTGGCAAATCCATAAAGACTCCCAACTCTTTTTCCACGAATACGCTAAGGCTAAAGTCAAAATGCCTGTCAGTA TCGCTATTGGTGGGGATTTGCTCTACACATGGTGCGCGACAGCCCCCCTACCTTATGGGATTTATGAACTCATGCTCTAT GGGTTTATGAGAGGAAAAAAAGCGCGCGTAATGCCATGCCTAAGCAACTCTTTAAGCGTGCCAAGCGACTGCGATATTGT GATAGAAGGGTTTGTAGATTGCGAAAAGCTAGAGCTTGAAGGGCCTTTTGGGGATCACACTGGCTATTACACCCCTATTG AGCCTTATCCTGTTTTAGAAGTCAAAACCATTAGCTACAAAAAAGATTCCATTTACTTAGCCACTGTGGTGGGTAAGCCC CCTTTAGAAGACAAATACATGGGGTATTTGACTGAACGCTTGTTCTTGCCCTTGCTTCAAATGAACGCCCCCAATCTCAT AGAATATTACATGCCAGAAAATGGGGTGTTTCATAATTTGATTTTAGCCAAAATACACACGCGCTATAACGCTCATGCCA AGCAAGTCATGCATGCTTTTTGGGGTGTGGGGCAGATGAGTTTTGTCAAACATGCGATTTTTGTCAATGAAGACGCTCCT AATCTAAGAGACACCAACGCTATCATTGAGTATATACTAGAGAATTTTTCTAAAGAAAACGCGCTCATCTCTCAAGGCGT ATGCGACGCCTTAGATCATGCAAGCCCTGAATACGCTATGGGGGGGAAACTCGGTATTGATGCGACCTCTAAAAGCAATA CCCCCTACCCCACGCTTTTAAACGATAGTGCCTTATTAGCGCTTTTACAAGATAAAATGCAAAATATCGTTCTTTTGAAG CAATATTACCCGCACACCCGTAACCCCATTTGCGTCATTAGCGTGGAAAAGAAAGACAAAAGCGTCATTGAATTGGCTAA AAACTTGCTCGGTTTTGAAGAACATTTACGCATTGTCATCTTTGTAGAGCATGCCAGCAACGATTTGAACAACCCTTACA TGCTGTTATGGCGCATCGTTAATAATATTGACGCCAGGCGTGATATTCTCACCTCTAAACATTGCTTTTTTATAGACGCT ACCAATAAGGGCGTTATGGATAAACATTTTAGAGAATGGCCCACCGAAACCAATTGCTCCATGGAAGTCATAGAAAATTT GAAAAAGAAAGGGCTTTTAAAAGATTTTGAAACTTTAAATCAAAAATTCCACCTCACGCATTCTTTCAGCACGCACAAAG AAGATCTATAA
Upstream 100 bases:
>100_bases CATTATTGTAGATGAAGAAGTTTCTTTGGAAGTTTTAGAAGAGCTTAAAAACATTCCTGCGTGCTTAAGCGTTCATTATG TGGTTATTTAAGGTAGTTGG
Downstream 100 bases:
>100_bases AGAATAGCCATAAAGAAGAATTATGTTAGATTATCGCCAAAAAATTGATGCTCTCATCACCAAAATAGAAAAGGCTCGCA CCGCCTATTCAAGGCACCAC
Product: hypothetical protein
Products: 2-octaprenylphenol; CO2 [C]
Alternate protein names: NA
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MRDFLKLLKKHDELKIIDTPLEVDLEIAHLAYIEAKKPNGGKALLFTQPIRKEHDQIKTFGMPVLMNAFGSFKRLDLLLK TPIESLQQRMQAFLHFNAPKNFTEGLKVLKDLWDLRHIFPKKTTRPKDLIIKQDKEVNLLDLPVLKTWEKDGGAFITMGQ VYTQSLDHQKKNLGMYRLQVYDKNHLGLHWQIHKDSQLFFHEYAKAKVKMPVSIAIGGDLLYTWCATAPLPYGIYELMLY GFMRGKKARVMPCLSNSLSVPSDCDIVIEGFVDCEKLELEGPFGDHTGYYTPIEPYPVLEVKTISYKKDSIYLATVVGKP PLEDKYMGYLTERLFLPLLQMNAPNLIEYYMPENGVFHNLILAKIHTRYNAHAKQVMHAFWGVGQMSFVKHAIFVNEDAP NLRDTNAIIEYILENFSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDSALLALLQDKMQNIVLLK QYYPHTRNPICVISVEKKDKSVIELAKNLLGFEEHLRIVIFVEHASNDLNNPYMLLWRIVNNIDARRDILTSKHCFFIDA TNKGVMDKHFREWPTETNCSMEVIENLKKKGLLKDFETLNQKFHLTHSFSTHKEDL
Sequences:
>Translated_616_residues MRDFLKLLKKHDELKIIDTPLEVDLEIAHLAYIEAKKPNGGKALLFTQPIRKEHDQIKTFGMPVLMNAFGSFKRLDLLLK TPIESLQQRMQAFLHFNAPKNFTEGLKVLKDLWDLRHIFPKKTTRPKDLIIKQDKEVNLLDLPVLKTWEKDGGAFITMGQ VYTQSLDHQKKNLGMYRLQVYDKNHLGLHWQIHKDSQLFFHEYAKAKVKMPVSIAIGGDLLYTWCATAPLPYGIYELMLY GFMRGKKARVMPCLSNSLSVPSDCDIVIEGFVDCEKLELEGPFGDHTGYYTPIEPYPVLEVKTISYKKDSIYLATVVGKP PLEDKYMGYLTERLFLPLLQMNAPNLIEYYMPENGVFHNLILAKIHTRYNAHAKQVMHAFWGVGQMSFVKHAIFVNEDAP NLRDTNAIIEYILENFSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDSALLALLQDKMQNIVLLK QYYPHTRNPICVISVEKKDKSVIELAKNLLGFEEHLRIVIFVEHASNDLNNPYMLLWRIVNNIDARRDILTSKHCFFIDA TNKGVMDKHFREWPTETNCSMEVIENLKKKGLLKDFETLNQKFHLTHSFSTHKEDL >Mature_616_residues MRDFLKLLKKHDELKIIDTPLEVDLEIAHLAYIEAKKPNGGKALLFTQPIRKEHDQIKTFGMPVLMNAFGSFKRLDLLLK TPIESLQQRMQAFLHFNAPKNFTEGLKVLKDLWDLRHIFPKKTTRPKDLIIKQDKEVNLLDLPVLKTWEKDGGAFITMGQ VYTQSLDHQKKNLGMYRLQVYDKNHLGLHWQIHKDSQLFFHEYAKAKVKMPVSIAIGGDLLYTWCATAPLPYGIYELMLY GFMRGKKARVMPCLSNSLSVPSDCDIVIEGFVDCEKLELEGPFGDHTGYYTPIEPYPVLEVKTISYKKDSIYLATVVGKP PLEDKYMGYLTERLFLPLLQMNAPNLIEYYMPENGVFHNLILAKIHTRYNAHAKQVMHAFWGVGQMSFVKHAIFVNEDAP NLRDTNAIIEYILENFSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDSALLALLQDKMQNIVLLK QYYPHTRNPICVISVEKKDKSVIELAKNLLGFEEHLRIVIFVEHASNDLNNPYMLLWRIVNNIDARRDILTSKHCFFIDA TNKGVMDKHFREWPTETNCSMEVIENLKKKGLLKDFETLNQKFHLTHSFSTHKEDL
Specific function: Unknown
COG id: COG0043
COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ubiD family [H]
Homologues:
Organism=Escherichia coli, GI1790277, Length=468, Percent_Identity=33.974358974359, Blast_Score=266, Evalue=3e-72, Organism=Saccharomyces cerevisiae, GI6320748, Length=324, Percent_Identity=25, Blast_Score=76, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002830 - InterPro: IPR022390 - InterPro: IPR009002 [H]
Pfam domain/function: PF01977 UbiD [H]
EC number: NA
Molecular weight: Translated: 70845; Mature: 70845
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDFLKLLKKHDELKIIDTPLEVDLEIAHLAYIEAKKPNGGKALLFTQPIRKEHDQIKTF CHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHC GMPVLMNAFGSFKRLDLLLKTPIESLQQRMQAFLHFNAPKNFTEGLKVLKDLWDLRHIFP CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCC KKTTRPKDLIIKQDKEVNLLDLPVLKTWEKDGGAFITMGQVYTQSLDHQKKNLGMYRLQV CCCCCCHHEEEECCCCCCEEECCCHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEE YDKNHLGLHWQIHKDSQLFFHEYAKAKVKMPVSIAIGGDLLYTWCATAPLPYGIYELMLY ECCCCCEEEEEEECCCHHHHHHHHHHEEECCEEEEECCHHHHHHHHCCCCCHHHHHHHHH GFMRGKKARVMPCLSNSLSVPSDCDIVIEGFVDCEKLELEGPFGDHTGYYTPIEPYPVLE HHHCCCCCEEEHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEE VKTISYKKDSIYLATVVGKPPLEDKYMGYLTERLFLPLLQMNAPNLIEYYMPENGVFHNL EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH ILAKIHTRYNAHAKQVMHAFWGVGQMSFVKHAIFVNEDAPNLRDTNAIIEYILENFSKEN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCC ALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDSALLALLQDKMQNIVLLK HHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHEEEEH QYYPHTRNPICVISVEKKDKSVIELAKNLLGFEEHLRIVIFVEHASNDLNNPYMLLWRIV HHCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHCCEEEEEEEECCCCCCCHHHHHHHHH NNIDARRDILTSKHCFFIDATNKGVMDKHFREWPTETNCSMEVIENLKKKGLLKDFETLN HCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHC QKFHLTHSFSTHKEDL CEEEEEECCCCCCCCC >Mature Secondary Structure MRDFLKLLKKHDELKIIDTPLEVDLEIAHLAYIEAKKPNGGKALLFTQPIRKEHDQIKTF CHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHC GMPVLMNAFGSFKRLDLLLKTPIESLQQRMQAFLHFNAPKNFTEGLKVLKDLWDLRHIFP CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCC KKTTRPKDLIIKQDKEVNLLDLPVLKTWEKDGGAFITMGQVYTQSLDHQKKNLGMYRLQV CCCCCCHHEEEECCCCCCEEECCCHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEE YDKNHLGLHWQIHKDSQLFFHEYAKAKVKMPVSIAIGGDLLYTWCATAPLPYGIYELMLY ECCCCCEEEEEEECCCHHHHHHHHHHEEECCEEEEECCHHHHHHHHCCCCCHHHHHHHHH GFMRGKKARVMPCLSNSLSVPSDCDIVIEGFVDCEKLELEGPFGDHTGYYTPIEPYPVLE HHHCCCCCEEEHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEE VKTISYKKDSIYLATVVGKPPLEDKYMGYLTERLFLPLLQMNAPNLIEYYMPENGVFHNL EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH ILAKIHTRYNAHAKQVMHAFWGVGQMSFVKHAIFVNEDAPNLRDTNAIIEYILENFSKEN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCC ALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDSALLALLQDKMQNIVLLK HHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHEEEEH QYYPHTRNPICVISVEKKDKSVIELAKNLLGFEEHLRIVIFVEHASNDLNNPYMLLWRIV HHCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHCCEEEEEEEECCCCCCCHHHHHHHHH NNIDARRDILTSKHCFFIDATNKGVMDKHFREWPTETNCSMEVIENLKKKGLLKDFETLN HCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHC QKFHLTHSFSTHKEDL CEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3-octaprenyl-4-hydroxybenzoate [C]
Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]